Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.5■■□□□ 1.35
NEK1Q96PY6 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NEK1Q96PY6 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.5■■□□□ 1.35
NEK1Q96PY6 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NEK1Q96PY6 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC23.5■■□□□ 1.35
NEK1Q96PY6 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NEK1Q96PY6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
NEK1Q96PY6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
NEK1Q96PY6 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NEK1Q96PY6 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.5■■□□□ 1.35
NEK1Q96PY6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23.5■■□□□ 1.35
NEK1Q96PY6 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.5■■□□□ 1.35
NEK1Q96PY6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 AC092368.3-202ENST00000574180 1591 ntBASIC23.49■■□□□ 1.35
NEK1Q96PY6 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 RER1-204ENST00000378518 522 ntTSL 3 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 AL355802.2-201ENST00000402069 882 ntBASIC23.49■■□□□ 1.35
NEK1Q96PY6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.49■■□□□ 1.35
NEK1Q96PY6 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
NEK1Q96PY6 AL158211.5-201ENST00000623583 2518 ntBASIC23.49■■□□□ 1.35
NEK1Q96PY6 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
NEK1Q96PY6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
NEK1Q96PY6 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 AC060766.5-201ENST00000590539 871 ntBASIC23.47■■□□□ 1.35
NEK1Q96PY6 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.47■■□□□ 1.35
NEK1Q96PY6 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
NEK1Q96PY6 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
NEK1Q96PY6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.46■■□□□ 1.35
NEK1Q96PY6 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
NEK1Q96PY6 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.46■■□□□ 1.35
NEK1Q96PY6 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.46■■□□□ 1.35
NEK1Q96PY6 PNMA6B-201ENST00000538162 1200 ntBASIC23.46■■□□□ 1.35
NEK1Q96PY6 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.46■■□□□ 1.35
NEK1Q96PY6 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
NEK1Q96PY6 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
NEK1Q96PY6 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.35
NEK1Q96PY6 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.45■■□□□ 1.35
NEK1Q96PY6 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
NEK1Q96PY6 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC23.45■■□□□ 1.34
NEK1Q96PY6 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
NEK1Q96PY6 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms