Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 YBX1P2-201ENST00000489612 999 ntBASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CSPG4Q6UVK1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 AC117947.1-201ENST00000427448 529 ntBASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CSPG4Q6UVK1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.39■□□□□ 0.22
CSPG4Q6UVK1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 TSPY14P-201ENST00000303979 915 ntBASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 AL024507.2-201ENST00000606070 2574 ntBASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 AC097488.1-201ENST00000507834 756 ntBASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 AC006538.3-201ENST00000612495 578 ntBASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CSPG4Q6UVK1 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSPG4Q6UVK1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 INGX-201ENST00000359239 846 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 KRT8P36-201ENST00000489121 1440 ntBASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSPG4Q6UVK1 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms