Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.61■□□□□ 0.57
RFX3P48380 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.61■□□□□ 0.57
RFX3P48380 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.61■□□□□ 0.57
RFX3P48380 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.61■□□□□ 0.57
RFX3P48380 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RFX3P48380 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
RFX3P48380 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RFX3P48380 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX3P48380 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX3P48380 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RFX3P48380 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX3P48380 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.6■□□□□ 0.57
RFX3P48380 DUSP5P2-201ENST00000426873 1033 ntBASIC18.6■□□□□ 0.57
RFX3P48380 GUSBP6-202ENST00000438529 1198 ntBASIC18.6■□□□□ 0.57
RFX3P48380 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.6■□□□□ 0.57
RFX3P48380 C2orf69P4-201ENST00000565394 541 ntBASIC18.6■□□□□ 0.57
RFX3P48380 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.6■□□□□ 0.57
RFX3P48380 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.6■□□□□ 0.57
RFX3P48380 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.6■□□□□ 0.57
RFX3P48380 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX3P48380 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RFX3P48380 AC120498.9-201ENST00000339021 3867 ntBASIC18.6■□□□□ 0.57
RFX3P48380 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFX3P48380 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RFX3P48380 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
RFX3P48380 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.59■□□□□ 0.57
RFX3P48380 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
RFX3P48380 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 AL355802.2-201ENST00000402069 882 ntBASIC18.59■□□□□ 0.57
RFX3P48380 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RFX3P48380 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.59■□□□□ 0.57
RFX3P48380 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.59■□□□□ 0.57
RFX3P48380 AL138781.1-201ENST00000566567 1274 ntBASIC18.59■□□□□ 0.57
RFX3P48380 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RFX3P48380 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.59■□□□□ 0.57
RFX3P48380 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.59■□□□□ 0.57
RFX3P48380 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
RFX3P48380 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.59■□□□□ 0.57
RFX3P48380 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFX3P48380 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFX3P48380 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFX3P48380 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFX3P48380 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFX3P48380 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.58■□□□□ 0.57
RFX3P48380 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.58■□□□□ 0.57
RFX3P48380 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.58■□□□□ 0.57
RFX3P48380 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 HLA-L-209ENST00000420110 1011 ntBASIC18.58■□□□□ 0.56
RFX3P48380 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.58■□□□□ 0.56
RFX3P48380 AC104771.1-201ENST00000603335 964 ntBASIC18.58■□□□□ 0.56
RFX3P48380 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
RFX3P48380 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
RFX3P48380 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.58■□□□□ 0.56
RFX3P48380 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.58■□□□□ 0.56
RFX3P48380 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.58■□□□□ 0.56
RFX3P48380 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
RFX3P48380 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.58■□□□□ 0.56
RFX3P48380 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFX3P48380 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.57■□□□□ 0.56
RFX3P48380 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.57■□□□□ 0.56
RFX3P48380 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.57■□□□□ 0.56
RFX3P48380 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
RFX3P48380 AFG3L1P-217ENST00000557444 2447 ntBASIC18.57■□□□□ 0.56
RFX3P48380 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.57■□□□□ 0.56
RFX3P48380 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.57■□□□□ 0.56
RFX3P48380 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
RFX3P48380 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RFX3P48380 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFX3P48380 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms