Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PTPN9P43378 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.66■□□□□ 0.9
PTPN9P43378 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.66■□□□□ 0.9
PTPN9P43378 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.66■□□□□ 0.9
PTPN9P43378 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PTPN9P43378 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.66■□□□□ 0.9
PTPN9P43378 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.66■□□□□ 0.9
PTPN9P43378 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN9P43378 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN9P43378 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN9P43378 AFG3L1P-217ENST00000557444 2447 ntBASIC20.65■□□□□ 0.9
PTPN9P43378 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN9P43378 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN9P43378 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN9P43378 AC125437.2-201ENST00000625180 2167 ntBASIC20.65■□□□□ 0.9
PTPN9P43378 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.65■□□□□ 0.9
PTPN9P43378 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.65■□□□□ 0.9
PTPN9P43378 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN9P43378 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.65■□□□□ 0.9
PTPN9P43378 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PTPN9P43378 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.65■□□□□ 0.9
PTPN9P43378 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PTPN9P43378 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN9P43378 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.65■□□□□ 0.9
PTPN9P43378 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.65■□□□□ 0.9
PTPN9P43378 AC008687.6-201ENST00000596318 630 ntBASIC20.65■□□□□ 0.9
PTPN9P43378 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.65■□□□□ 0.9
PTPN9P43378 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN9P43378 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN9P43378 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN9P43378 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PTPN9P43378 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTPN9P43378 AC124283.5-201ENST00000624661 1809 ntBASIC20.64■□□□□ 0.9
PTPN9P43378 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.64■□□□□ 0.89
PTPN9P43378 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN9P43378 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN9P43378 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PTPN9P43378 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.64■□□□□ 0.89
PTPN9P43378 RNA5SP413-201ENST00000516373 109 ntBASIC20.64■□□□□ 0.89
PTPN9P43378 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.64■□□□□ 0.89
PTPN9P43378 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.64■□□□□ 0.89
PTPN9P43378 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.64■□□□□ 0.89
PTPN9P43378 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.64■□□□□ 0.89
PTPN9P43378 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.64■□□□□ 0.89
PTPN9P43378 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN9P43378 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN9P43378 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.64■□□□□ 0.89
PTPN9P43378 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.64■□□□□ 0.89
PTPN9P43378 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTPN9P43378 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PTPN9P43378 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 TFP1-202ENST00000475455 1573 ntBASIC20.63■□□□□ 0.89
PTPN9P43378 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PTPN9P43378 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.63■□□□□ 0.89
PTPN9P43378 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
PTPN9P43378 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PTPN9P43378 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PTPN9P43378 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PTPN9P43378 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.63■□□□□ 0.89
PTPN9P43378 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.63■□□□□ 0.89
PTPN9P43378 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.63■□□□□ 0.89
PTPN9P43378 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.62■□□□□ 0.89
PTPN9P43378 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PTPN9P43378 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
PTPN9P43378 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PTPN9P43378 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.62■□□□□ 0.89
PTPN9P43378 AC008403.3-201ENST00000598924 454 ntBASIC20.62■□□□□ 0.89
PTPN9P43378 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PTPN9P43378 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.62■□□□□ 0.89
PTPN9P43378 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PTPN9P43378 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.62■□□□□ 0.89
PTPN9P43378 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PTPN9P43378 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PTPN9P43378 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.62■□□□□ 0.89
PTPN9P43378 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.62■□□□□ 0.89
PTPN9P43378 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN9P43378 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.61■□□□□ 0.89
PTPN9P43378 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms