Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.19■□□□□ 0.82
NFKB1P19838 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.19■□□□□ 0.82
NFKB1P19838 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
NFKB1P19838 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.19■□□□□ 0.82
NFKB1P19838 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 HLA-L-209ENST00000420110 1011 ntBASIC20.19■□□□□ 0.82
NFKB1P19838 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.19■□□□□ 0.82
NFKB1P19838 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.19■□□□□ 0.82
NFKB1P19838 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.19■□□□□ 0.82
NFKB1P19838 AC005829.2-201ENST00000571422 1056 ntBASIC20.19■□□□□ 0.82
NFKB1P19838 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.19■□□□□ 0.82
NFKB1P19838 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.19■□□□□ 0.82
NFKB1P19838 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.19■□□□□ 0.82
NFKB1P19838 PHGDH-210ENST00000641115 1638 ntBASIC20.19■□□□□ 0.82
NFKB1P19838 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NFKB1P19838 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.19■□□□□ 0.82
NFKB1P19838 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 AL158211.5-201ENST00000623583 2518 ntBASIC20.18■□□□□ 0.82
NFKB1P19838 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NFKB1P19838 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.18■□□□□ 0.82
NFKB1P19838 AC009237.14-201ENST00000609975 1594 ntBASIC20.18■□□□□ 0.82
NFKB1P19838 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 AC069152.1-201ENST00000438030 544 ntBASIC20.18■□□□□ 0.82
NFKB1P19838 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.18■□□□□ 0.82
NFKB1P19838 AC142086.2-201ENST00000569753 217 ntBASIC20.18■□□□□ 0.82
NFKB1P19838 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.18■□□□□ 0.82
NFKB1P19838 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
NFKB1P19838 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.18■□□□□ 0.82
NFKB1P19838 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NFKB1P19838 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 AL355802.2-201ENST00000402069 882 ntBASIC20.17■□□□□ 0.82
NFKB1P19838 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 AL390719.1-204ENST00000412397 1219 ntBASIC20.17■□□□□ 0.82
NFKB1P19838 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.17■□□□□ 0.82
NFKB1P19838 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 AC006557.6-201ENST00000623071 864 ntBASIC20.17■□□□□ 0.82
NFKB1P19838 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NFKB1P19838 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NFKB1P19838 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.16■□□□□ 0.82
NFKB1P19838 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.16■□□□□ 0.82
NFKB1P19838 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.16■□□□□ 0.82
NFKB1P19838 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.16■□□□□ 0.82
NFKB1P19838 AC073210.2-201ENST00000430369 194 ntBASIC20.16■□□□□ 0.82
NFKB1P19838 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
NFKB1P19838 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.16■□□□□ 0.82
NFKB1P19838 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 AC133041.1-202ENST00000642053 222 ntBASIC20.16■□□□□ 0.82
NFKB1P19838 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
NFKB1P19838 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.16■□□□□ 0.82
NFKB1P19838 AP001271.2-201ENST00000624018 1556 ntBASIC20.16■□□□□ 0.82
NFKB1P19838 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.16■□□□□ 0.82
NFKB1P19838 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NFKB1P19838 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NFKB1P19838 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NFKB1P19838 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.15■□□□□ 0.82
NFKB1P19838 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms