Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 RER1-204ENST00000378518 522 ntTSL 3 BASIC23.09■■□□□ 1.29
CDKL5O76039 AC069152.1-201ENST00000438030 544 ntBASIC23.09■■□□□ 1.29
CDKL5O76039 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.09■■□□□ 1.29
CDKL5O76039 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.09■■□□□ 1.29
CDKL5O76039 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDKL5O76039 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.09■■□□□ 1.29
CDKL5O76039 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.09■■□□□ 1.29
CDKL5O76039 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CDKL5O76039 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
CDKL5O76039 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CDKL5O76039 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDKL5O76039 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
CDKL5O76039 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CDKL5O76039 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDKL5O76039 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.09■■□□□ 1.29
CDKL5O76039 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDKL5O76039 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CDKL5O76039 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.08■■□□□ 1.29
CDKL5O76039 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CDKL5O76039 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.08■■□□□ 1.29
CDKL5O76039 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.08■■□□□ 1.29
CDKL5O76039 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 AC098934.4-201ENST00000564127 592 ntBASIC23.08■■□□□ 1.29
CDKL5O76039 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CDKL5O76039 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.29
CDKL5O76039 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.08■■□□□ 1.29
CDKL5O76039 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.08■■□□□ 1.29
CDKL5O76039 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CDKL5O76039 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CDKL5O76039 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC23.08■■□□□ 1.28
CDKL5O76039 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDKL5O76039 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDKL5O76039 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.07■■□□□ 1.28
CDKL5O76039 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC23.07■■□□□ 1.28
CDKL5O76039 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC23.07■■□□□ 1.28
CDKL5O76039 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDKL5O76039 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC23.07■■□□□ 1.28
CDKL5O76039 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CDKL5O76039 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
CDKL5O76039 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CDKL5O76039 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
CDKL5O76039 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 AC092368.3-202ENST00000574180 1591 ntBASIC23.06■■□□□ 1.28
CDKL5O76039 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDKL5O76039 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CDKL5O76039 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC23.06■■□□□ 1.28
CDKL5O76039 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.05■■□□□ 1.28
CDKL5O76039 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.05■■□□□ 1.28
CDKL5O76039 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.05■■□□□ 1.28
CDKL5O76039 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.05■■□□□ 1.28
CDKL5O76039 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.05■■□□□ 1.28
CDKL5O76039 AC060766.5-201ENST00000590539 871 ntBASIC23.05■■□□□ 1.28
CDKL5O76039 AC083880.1-201ENST00000608266 535 ntBASIC23.05■■□□□ 1.28
CDKL5O76039 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CDKL5O76039 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.05■■□□□ 1.28
CDKL5O76039 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CDKL5O76039 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.05■■□□□ 1.28
CDKL5O76039 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDKL5O76039 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.05■■□□□ 1.28
CDKL5O76039 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.05■■□□□ 1.28
CDKL5O76039 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.05■■□□□ 1.28
CDKL5O76039 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC23.04■■□□□ 1.28
CDKL5O76039 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC23.04■■□□□ 1.28
CDKL5O76039 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
CDKL5O76039 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDKL5O76039 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC23.04■■□□□ 1.28
CDKL5O76039 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.04■■□□□ 1.28
CDKL5O76039 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDKL5O76039 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CDKL5O76039 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.04■■□□□ 1.28
CDKL5O76039 HES2-206ENST00000489730 730 ntTSL 2 BASIC23.04■■□□□ 1.28
CDKL5O76039 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.04■■□□□ 1.28
CDKL5O76039 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.04■■□□□ 1.28
CDKL5O76039 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC23.04■■□□□ 1.28
CDKL5O76039 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDKL5O76039 AC125437.2-201ENST00000625180 2167 ntBASIC23.04■■□□□ 1.28
CDKL5O76039 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDKL5O76039 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms