Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP4O75161 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC28.16■■■□□ 2.1
NPHP4O75161 C1orf229-201ENST00000623686 2258 ntBASIC28.16■■■□□ 2.1
NPHP4O75161 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC28.16■■■□□ 2.1
NPHP4O75161 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC28.16■■■□□ 2.1
NPHP4O75161 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC28.16■■■□□ 2.1
NPHP4O75161 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC28.16■■■□□ 2.1
NPHP4O75161 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC28.16■■■□□ 2.1
NPHP4O75161 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP4O75161 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP4O75161 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP4O75161 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC28.15■■■□□ 2.1
NPHP4O75161 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP4O75161 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC28.15■■■□□ 2.1
NPHP4O75161 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC28.15■■■□□ 2.1
NPHP4O75161 AL512604.3-201ENST00000569583 964 ntBASIC28.15■■■□□ 2.1
NPHP4O75161 AC023511.2-201ENST00000618803 211 ntBASIC28.15■■■□□ 2.1
NPHP4O75161 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP4O75161 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP4O75161 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP4O75161 TUBB8P6-201ENST00000436895 1288 ntBASIC28.14■■■□□ 2.1
NPHP4O75161 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC28.14■■■□□ 2.1
NPHP4O75161 TSPY17P-201ENST00000450329 467 ntBASIC28.14■■■□□ 2.1
NPHP4O75161 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC28.14■■■□□ 2.1
NPHP4O75161 HLA-A-209ENST00000638375 975 ntBASIC28.14■■■□□ 2.1
NPHP4O75161 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
NPHP4O75161 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC28.14■■■□□ 2.09
NPHP4O75161 GOLGA2P6-201ENST00000340929 2049 ntBASIC28.13■■■□□ 2.09
NPHP4O75161 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP4O75161 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP4O75161 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC28.13■■■□□ 2.09
NPHP4O75161 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC28.13■■■□□ 2.09
NPHP4O75161 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 RN7SL510P-201ENST00000581311 263 ntBASIC28.13■■■□□ 2.09
NPHP4O75161 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC28.13■■■□□ 2.09
NPHP4O75161 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP4O75161 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP4O75161 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC28.13■■■□□ 2.09
NPHP4O75161 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP4O75161 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
NPHP4O75161 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP4O75161 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC28.12■■■□□ 2.09
NPHP4O75161 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC28.12■■■□□ 2.09
NPHP4O75161 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC28.12■■■□□ 2.09
NPHP4O75161 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC28.12■■■□□ 2.09
NPHP4O75161 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC28.12■■■□□ 2.09
NPHP4O75161 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC28.12■■■□□ 2.09
NPHP4O75161 NPAP1P7-201ENST00000613027 823 ntBASIC28.12■■■□□ 2.09
NPHP4O75161 DFFB-212ENST00000625756 649 ntTSL 5 BASIC28.12■■■□□ 2.09
NPHP4O75161 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC28.12■■■□□ 2.09
NPHP4O75161 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC28.12■■■□□ 2.09
NPHP4O75161 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC28.12■■■□□ 2.09
NPHP4O75161 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 AC116351.2-201ENST00000606540 1585 ntBASIC28.12■■■□□ 2.09
NPHP4O75161 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP4O75161 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
NPHP4O75161 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
NPHP4O75161 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC28.11■■■□□ 2.09
NPHP4O75161 ZNF444P1-201ENST00000559497 298 ntBASIC28.11■■■□□ 2.09
NPHP4O75161 AL353719.1-201ENST00000566847 864 ntBASIC28.11■■■□□ 2.09
NPHP4O75161 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC28.11■■■□□ 2.09
NPHP4O75161 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC28.11■■■□□ 2.09
NPHP4O75161 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP4O75161 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC28.11■■■□□ 2.09
NPHP4O75161 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP4O75161 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP4O75161 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC28.11■■■□□ 2.09
NPHP4O75161 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP4O75161 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP4O75161 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP4O75161 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC28.11■■■□□ 2.09
NPHP4O75161 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
NPHP4O75161 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
NPHP4O75161 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
NPHP4O75161 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC28.1■■■□□ 2.09
NPHP4O75161 GPALPP1-207ENST00000611650 899 ntBASIC28.1■■■□□ 2.09
NPHP4O75161 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
NPHP4O75161 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC28.1■■■□□ 2.09
NPHP4O75161 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
NPHP4O75161 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC28.1■■■□□ 2.09
NPHP4O75161 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms