Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
MSH5O43196 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
MSH5O43196 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC26.7■■□□□ 1.86
MSH5O43196 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC26.7■■□□□ 1.86
MSH5O43196 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
MSH5O43196 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC26.7■■□□□ 1.86
MSH5O43196 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC26.7■■□□□ 1.86
MSH5O43196 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC26.7■■□□□ 1.86
MSH5O43196 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC26.69■■□□□ 1.86
MSH5O43196 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
MSH5O43196 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC26.69■■□□□ 1.86
MSH5O43196 AC026471.1-201ENST00000564629 3026 ntBASIC26.69■■□□□ 1.86
MSH5O43196 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 RPS26-201ENST00000356464 1183 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 AC092905.1-201ENST00000467527 949 ntBASIC26.69■■□□□ 1.86
MSH5O43196 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC26.69■■□□□ 1.86
MSH5O43196 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.69■■□□□ 1.86
MSH5O43196 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC26.69■■□□□ 1.86
MSH5O43196 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 AC020763.2-201ENST00000623155 1255 ntBASIC26.69■■□□□ 1.86
MSH5O43196 ME2-218ENST00000640965 2476 ntTSL 5 BASIC26.69■■□□□ 1.86
MSH5O43196 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
MSH5O43196 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH5O43196 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
MSH5O43196 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC26.68■■□□□ 1.86
MSH5O43196 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC26.68■■□□□ 1.86
MSH5O43196 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
MSH5O43196 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC26.67■■□□□ 1.86
MSH5O43196 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
MSH5O43196 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 PAICSP2-201ENST00000429118 1150 ntBASIC26.67■■□□□ 1.86
MSH5O43196 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC26.67■■□□□ 1.86
MSH5O43196 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC26.67■■□□□ 1.86
MSH5O43196 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC26.67■■□□□ 1.86
MSH5O43196 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
MSH5O43196 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC26.66■■□□□ 1.86
MSH5O43196 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC26.66■■□□□ 1.86
MSH5O43196 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC26.66■■□□□ 1.86
MSH5O43196 ATG10-IT1-201ENST00000396880 487 ntBASIC26.66■■□□□ 1.86
MSH5O43196 CDV3P1-201ENST00000471403 739 ntBASIC26.66■■□□□ 1.86
MSH5O43196 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 TK2-204ENST00000525974 1178 ntTSL 2 BASIC26.66■■□□□ 1.86
MSH5O43196 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC26.66■■□□□ 1.86
MSH5O43196 FAM21FP-204ENST00000608637 956 ntBASIC26.66■■□□□ 1.86
MSH5O43196 AC016597.2-201ENST00000613256 341 ntBASIC26.66■■□□□ 1.86
MSH5O43196 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
MSH5O43196 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.66■■□□□ 1.86
MSH5O43196 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC26.65■■□□□ 1.86
MSH5O43196 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
MSH5O43196 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH5O43196 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC26.65■■□□□ 1.86
MSH5O43196 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
MSH5O43196 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
MSH5O43196 RPS2P55-201ENST00000397318 883 ntBASIC26.65■■□□□ 1.86
MSH5O43196 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC26.65■■□□□ 1.86
MSH5O43196 AC107956.1-201ENST00000494359 873 ntBASIC26.65■■□□□ 1.86
MSH5O43196 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC26.65■■□□□ 1.86
MSH5O43196 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
MSH5O43196 FGA-203ENST00000622532 1130 ntTSL 5 BASIC26.65■■□□□ 1.86
MSH5O43196 SUGT1P3-205ENST00000633814 572 ntTSL 3 BASIC26.65■■□□□ 1.86
MSH5O43196 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
MSH5O43196 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC26.65■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms