Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
HMGN4O00479 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 AF201337.1-201ENST00000520239 748 ntBASIC18.47■□□□□ 0.55
HMGN4O00479 AC105036.2-201ENST00000569468 176 ntBASIC18.47■□□□□ 0.55
HMGN4O00479 RAP2CP1-201ENST00000605103 478 ntBASIC18.47■□□□□ 0.55
HMGN4O00479 AL137784.2-201ENST00000607332 1000 ntBASIC18.47■□□□□ 0.55
HMGN4O00479 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGN4O00479 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HMGN4O00479 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGN4O00479 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGN4O00479 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
HMGN4O00479 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGN4O00479 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGN4O00479 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 MIR663A-201ENST00000385250 93 ntBASIC18.46■□□□□ 0.55
HMGN4O00479 GPX1P1-201ENST00000388829 606 ntBASIC18.46■□□□□ 0.55
HMGN4O00479 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HMGN4O00479 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGN4O00479 AC026185.1-201ENST00000445748 174 ntBASIC18.46■□□□□ 0.55
HMGN4O00479 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGN4O00479 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGN4O00479 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.46■□□□□ 0.55
HMGN4O00479 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGN4O00479 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
HMGN4O00479 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGN4O00479 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGN4O00479 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
HMGN4O00479 AC005332.7-201ENST00000614046 2005 ntBASIC18.45■□□□□ 0.54
HMGN4O00479 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HMGN4O00479 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGN4O00479 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGN4O00479 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGN4O00479 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGN4O00479 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
HMGN4O00479 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HMGN4O00479 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGN4O00479 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGN4O00479 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.45■□□□□ 0.54
HMGN4O00479 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.45■□□□□ 0.54
HMGN4O00479 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGN4O00479 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGN4O00479 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGN4O00479 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGN4O00479 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGN4O00479 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGN4O00479 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGN4O00479 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HMGN4O00479 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGN4O00479 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HMGN4O00479 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGN4O00479 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGN4O00479 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 MIR935-201ENST00000401179 91 ntBASIC18.44■□□□□ 0.54
HMGN4O00479 BX276092.2-201ENST00000417668 665 ntBASIC18.44■□□□□ 0.54
HMGN4O00479 CROCCP5-201ENST00000436658 830 ntBASIC18.44■□□□□ 0.54
HMGN4O00479 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGN4O00479 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGN4O00479 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGN4O00479 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
HMGN4O00479 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGN4O00479 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.43■□□□□ 0.54
HMGN4O00479 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
HMGN4O00479 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms