Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 RNA5SP382-201ENST00000363355 112 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 RN7SKP191-201ENST00000364713 306 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC097721.1-201ENST00000427150 1253 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AL359839.1-201ENST00000451975 1160 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 RPSAP24-201ENST00000461543 873 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 RPL23AP64-201ENST00000469465 435 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 TRIM36-IT1-201ENST00000503723 881 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC091849.1-201ENST00000509920 121 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 RNU2-45P-201ENST00000516068 187 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC084337.1-201ENST00000524809 686 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC105036.1-201ENST00000566222 271 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 BUB1P1-201ENST00000603541 607 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC007671.1-201ENST00000616957 830 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC005277.2-201ENST00000617898 390 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AC127071.2-201ENST00000623293 527 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 AL121936.2-201ENST00000641935 662 ntBASIC6.8□□□□□ -1.32
PCDH9Q9HC56 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
PCDH9Q9HC56 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 NEK2P2-201ENST00000438441 1338 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 TRBV29OR9-2-201ENST00000427589 333 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 SNRPBP1-201ENST00000443634 282 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 GAPDHP20-201ENST00000444107 1007 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 RPL26P30-201ENST00000453533 435 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 RN7SL655P-201ENST00000486087 298 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 RN7SL350P-201ENST00000492591 299 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AK6-204ENST00000512561 587 ntTSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC007068.2-201ENST00000543168 395 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AL445383.1-201ENST00000554689 874 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AP003115.1-201ENST00000569849 463 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 RPS4XP21-201ENST00000603814 750 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC114546.4-201ENST00000624413 369 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 ABCA11P-202ENST00000504019 2110 ntBASIC6.79□□□□□ -1.32
PCDH9Q9HC56 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.79□□□□□ -1.32
PCDH9Q9HC56 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.78□□□□□ -1.32
PCDH9Q9HC56 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.78□□□□□ -1.32
PCDH9Q9HC56 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
PCDH9Q9HC56 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
PCDH9Q9HC56 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.78□□□□□ -1.32
PCDH9Q9HC56 HCFC2P1-201ENST00000392864 1592 ntBASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms