Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AL078624.2-201ENST00000605063 554 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AC010333.3-201ENST00000615100 402 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AL445647.2-201ENST00000615170 130 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AP001885.1-201ENST00000621658 558 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AP003108.4-201ENST00000623917 878 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 LRRC37A12P-201ENST00000454917 1801 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 AL161901.1-201ENST00000624954 3425 ntBASIC5.78□□□□□ -1.48
NKX3-1Q99801 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
NKX3-1Q99801 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NKX3-1Q99801 AP002370.1-201ENST00000528055 1602 ntBASIC5.77□□□□□ -1.48
NKX3-1Q99801 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 RNA5SP333-201ENST00000363466 118 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 RNA5SP334-201ENST00000364825 118 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 SETP22-201ENST00000412243 957 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 MICG-208ENST00000416822 132 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 PPIAP23-201ENST00000420099 497 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 AC239367.3-201ENST00000428996 814 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 NMNAT1P3-201ENST00000457517 888 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 RN7SL216P-201ENST00000471607 298 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 PPP1R2P6-201ENST00000478565 588 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 RN7SL518P-201ENST00000491887 280 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 H3F3AP3-201ENST00000497682 407 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 MTCYBP44-201ENST00000514835 823 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 RNU6-964P-201ENST00000516524 69 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 CASC11-203ENST00000519071 791 ntTSL 3 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 IGHV3-57-201ENST00000520143 280 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 IGLV3-6-201ENST00000523937 250 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 SSU72P6-201ENST00000532644 488 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 DCN-215ENST00000550099 719 ntTSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 PPIAP6-201ENST00000557078 499 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 AC011921.2-201ENST00000589465 152 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 AL157899.1-201ENST00000604110 936 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 AL591222.2-201ENST00000604443 754 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 AP005212.4-201ENST00000614206 710 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 CNTNAP3P1-201ENST00000616657 906 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 AC117503.3-201ENST00000623811 601 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 JAKMIP2-AS1-202ENST00000627433 831 ntTSL 3 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 MTCO1P25-201ENST00000414449 1799 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 Z97989.1-201ENST00000531702 2421 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 DOCK11P1-201ENST00000553480 5932 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 MKI67P1-201ENST00000604297 1460 ntBASIC5.77□□□□□ -1.49
NKX3-1Q99801 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
NKX3-1Q99801 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NKX3-1Q99801 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AL355377.1-201ENST00000621125 1653 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC079753.1-201ENST00000623243 3868 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms