Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
USP39Q53GS9 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
USP39Q53GS9 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 AL133260.1-201ENST00000405720 405 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 LUZP4P1-201ENST00000415420 344 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AL359885.1-201ENST00000415786 903 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 MTND4LP7-201ENST00000431728 294 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 AC245291.3-201ENST00000443400 292 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 LDHBP2-201ENST00000456969 1005 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 SNORA81.1-201ENST00000458922 177 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 ATP5G1P3-201ENST00000463301 410 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AC104629.2-201ENST00000468627 598 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 RPL5P16-201ENST00000471467 790 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 RN7SL568P-201ENST00000493069 298 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 TRAV31-201ENST00000502780 342 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 BOLA3P3-201ENST00000505182 232 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AC055733.3-201ENST00000505214 523 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 PGAM4P2-201ENST00000512491 721 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC7.08□□□□□ -1.28
USP39Q53GS9 AC135279.1-201ENST00000543493 504 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 SETP3-201ENST00000581726 813 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 MIR4732-201ENST00000581873 76 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 MIR4310-201ENST00000582950 57 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 NDUFB9P1-201ENST00000604683 510 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AC097504.2-201ENST00000608088 454 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 AC084824.5-201ENST00000612009 413 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 MIR6823-201ENST00000622118 61 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 AL355480.1-201ENST00000629041 99 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 AC138627.1-204ENST00000641894 765 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 MTND4P21-201ENST00000453886 1357 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 AL512283.1-201ENST00000606756 1384 ntBASIC7.08□□□□□ -1.28
USP39Q53GS9 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC7.07□□□□□ -1.28
USP39Q53GS9 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
USP39Q53GS9 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC120036.2-201ENST00000509729 1474 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 AC217777.1-201ENST00000570034 1471 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC7.07□□□□□ -1.28
USP39Q53GS9 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC7.07□□□□□ -1.28
USP39Q53GS9 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC7.07□□□□□ -1.28
USP39Q53GS9 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
USP39Q53GS9 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 RN7SKP254-201ENST00000410685 310 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 GABARAPL3-201ENST00000412799 354 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 AL139184.1-202ENST00000422303 222 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 BX119917.1-201ENST00000432517 502 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
USP39Q53GS9 TIMM8BP2-201ENST00000445940 251 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 AC099063.2-201ENST00000446360 662 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 ZNF736P6Y-201ENST00000447526 1213 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 EEF1B2P3-201ENST00000447718 678 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 MTND1P31-201ENST00000449206 961 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AL122001.1-201ENST00000457027 370 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC7.07□□□□□ -1.28
USP39Q53GS9 RN7SL390P-201ENST00000470634 284 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC7.07□□□□□ -1.28
USP39Q53GS9 MTND4LP31-201ENST00000514859 294 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AP003049.1-201ENST00000529418 457 ntBASIC7.07□□□□□ -1.28
USP39Q53GS9 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC7.07□□□□□ -1.28
USP39Q53GS9 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms