Protein–RNA interactions for Protein: Q96ST3

SIN3A, Paired amphipathic helix protein Sin3a, humanhuman

Predictions only

Length 1,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIN3AQ96ST3 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AL391419.1-201ENST00000398901 1275 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC097721.1-201ENST00000427150 1253 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC245291.3-201ENST00000443400 292 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 RN7SL39P-201ENST00000462264 297 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 BMS1P16-201ENST00000556075 1147 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC090616.1-201ENST00000583895 447 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC097467.4-201ENST00000605504 141 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC104581.5-201ENST00000624171 7141 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC011592.1-201ENST00000624647 3634 ntBASIC9.37□□□□□ -0.91
SIN3AQ96ST3 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC9.37□□□□□ -0.91
SIN3AQ96ST3 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AL391262.1-201ENST00000556558 1992 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 MIR191-201ENST00000384873 92 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 RN7SKP38-201ENST00000410782 309 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AC011742.2-201ENST00000443818 352 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 RPS7P10-201ENST00000464254 603 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 GM2AP2-201ENST00000491764 562 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 MIR7854-201ENST00000620068 65 ntBASIC9.36□□□□□ -0.91
SIN3AQ96ST3 CASC22-202ENST00000628396 802 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SIN3AQ96ST3 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AL157702.1-201ENST00000398764 426 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 RN7SKP146-201ENST00000410242 334 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 DHFRP2-201ENST00000414224 547 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 SMARCE1P1-201ENST00000417747 1186 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 GAPDHP19-201ENST00000431768 1005 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 CDY10P-201ENST00000452415 1567 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 BZW1P1-201ENST00000454901 1240 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC139272.1-201ENST00000505516 640 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC131392.1-201ENST00000506490 633 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC093816.1-201ENST00000515076 913 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 RNA5SP206-201ENST00000516703 121 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC135983.3-201ENST00000528049 1226 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 TDGP1-201ENST00000543961 1229 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 DCN-209ENST00000546745 1026 ntTSL 3 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 NDUFB9P1-201ENST00000604683 510 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC024255.1-201ENST00000614376 102 ntBASIC9.35□□□□□ -0.91
SIN3AQ96ST3 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SIN3AQ96ST3 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms