Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF471-201ENST00000308031 6287 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC7.98□□□□□ -1.13
COL5A3P25940 FLJ42393-201ENST00000623801 2270 ntBASIC7.98□□□□□ -1.13
COL5A3P25940 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC7.98□□□□□ -1.13
COL5A3P25940 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.98□□□□□ -1.13
COL5A3P25940 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 TENM2-203ENST00000518659 8550 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
COL5A3P25940 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC7.98□□□□□ -1.13
COL5A3P25940 EEF1B2P8-201ENST00000414101 671 ntBASIC7.98□□□□□ -1.13
COL5A3P25940 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC7.98□□□□□ -1.13
COL5A3P25940 BRWD1P3-201ENST00000428816 390 ntBASIC7.98□□□□□ -1.13
COL5A3P25940 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.98□□□□□ -1.13
COL5A3P25940 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC7.98□□□□□ -1.13
COL5A3P25940 IGKV1D-22-201ENST00000518953 324 ntBASIC7.98□□□□□ -1.13
COL5A3P25940 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC7.98□□□□□ -1.13
COL5A3P25940 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC7.98□□□□□ -1.13
COL5A3P25940 ARHGEF11-202ENST00000368194 6889 ntAPPRIS P4 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL5A3P25940 ZSWIM5P3-201ENST00000511265 2743 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC7.97□□□□□ -1.13
COL5A3P25940 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 PSG10P-201ENST00000501199 1500 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 APP-206ENST00000359726 3294 ntTSL 2 BASIC7.97□□□□□ -1.13
COL5A3P25940 AC015689.2-201ENST00000528172 1738 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 LINC01226-208ENST00000640623 5019 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 ROBO2-202ENST00000461745 8946 ntAPPRIS P2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7.97□□□□□ -1.13
COL5A3P25940 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
COL5A3P25940 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC7.97□□□□□ -1.13
COL5A3P25940 AC138915.4-201ENST00000565549 4147 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC7.97□□□□□ -1.13
COL5A3P25940 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC7.97□□□□□ -1.13
COL5A3P25940 PPIAP10-201ENST00000438675 458 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC7.97□□□□□ -1.13
COL5A3P25940 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC7.97□□□□□ -1.13
COL5A3P25940 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 MIR4489-201ENST00000578869 62 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC7.97□□□□□ -1.13
COL5A3P25940 RPL12P48-201ENST00000605620 304 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC7.97□□□□□ -1.13
COL5A3P25940 AC005332.9-201ENST00000620266 2921 ntBASIC7.97□□□□□ -1.13
COL5A3P25940 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL5A3P25940 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC7.97□□□□□ -1.13
COL5A3P25940 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
COL5A3P25940 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
COL5A3P25940 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC7.96□□□□□ -1.13
COL5A3P25940 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC7.96□□□□□ -1.13
COL5A3P25940 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 RNU1-134P-201ENST00000362935 165 ntBASIC7.96□□□□□ -1.14
COL5A3P25940 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC7.96□□□□□ -1.14
COL5A3P25940 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC7.96□□□□□ -1.14
COL5A3P25940 RN7SL629P-201ENST00000489622 285 ntBASIC7.96□□□□□ -1.14
COL5A3P25940 AC106800.3-201ENST00000511389 308 ntBASIC7.96□□□□□ -1.14
COL5A3P25940 IGKV2-19-201ENST00000518132 283 ntBASIC7.96□□□□□ -1.14
COL5A3P25940 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC7.96□□□□□ -1.14
COL5A3P25940 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 MIR6793-201ENST00000612376 63 ntBASIC7.96□□□□□ -1.14
COL5A3P25940 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC7.96□□□□□ -1.14
COL5A3P25940 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 LMO7-218ENST00000526202 4121 ntTSL 2 BASIC7.96□□□□□ -1.14
COL5A3P25940 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC7.96□□□□□ -1.14
COL5A3P25940 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 RYR1-201ENST00000355481 15377 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC7.96□□□□□ -1.14
COL5A3P25940 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
COL5A3P25940 Z97832.2-201ENST00000605896 4261 ntBASIC7.96□□□□□ -1.14
COL5A3P25940 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC7.96□□□□□ -1.14
COL5A3P25940 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC7.96□□□□□ -1.14
COL5A3P25940 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC7.95□□□□□ -1.14
COL5A3P25940 IREB2-208ENST00000560440 4396 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL5A3P25940 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL5A3P25940 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC7.95□□□□□ -1.14
COL5A3P25940 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC7.95□□□□□ -1.14
COL5A3P25940 AL132875.1-201ENST00000403623 949 ntBASIC7.95□□□□□ -1.14
COL5A3P25940 RPS14P4-201ENST00000415880 418 ntBASIC7.95□□□□□ -1.14
COL5A3P25940 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC7.95□□□□□ -1.14
COL5A3P25940 GAPDHP23-201ENST00000444823 993 ntBASIC7.95□□□□□ -1.14
COL5A3P25940 AL445665.1-202ENST00000452436 324 ntBASIC7.95□□□□□ -1.14
COL5A3P25940 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC7.95□□□□□ -1.14
COL5A3P25940 AC027348.2-201ENST00000624375 642 ntBASIC7.95□□□□□ -1.14
COL5A3P25940 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC7.95□□□□□ -1.14
COL5A3P25940 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.95□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms