Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC111000.1-201ENST00000514545 713 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 SCARNA18.2-201ENST00000516882 84 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 RN7SKP233-201ENST00000517005 110 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC8.27□□□□□ -1.09
HMGB1P09429 IGLVV-66-201ENST00000523818 341 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC087888.1-201ENST00000550884 1254 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 AC018552.1-201ENST00000562099 811 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 SNORA70D-201ENST00000578836 135 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC073333.2-201ENST00000603589 769 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC006840.1-201ENST00000623069 542 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC8.27□□□□□ -1.09
HMGB1P09429 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 AC092821.2-201ENST00000545710 2042 ntBASIC8.27□□□□□ -1.09
HMGB1P09429 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HMGB1P09429 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC8.27□□□□□ -1.09
HMGB1P09429 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 Z93929.1-201ENST00000418200 1475 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
HMGB1P09429 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC8.26□□□□□ -1.09
HMGB1P09429 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 RNU12-2P-201ENST00000364789 156 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 NPL-202ENST00000367552 745 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
HMGB1P09429 RNA5SP53-201ENST00000391299 120 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 NPM1P31-201ENST00000399021 764 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC8.26□□□□□ -1.09
HMGB1P09429 AL512504.1-201ENST00000415494 778 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 SMARCE1P1-201ENST00000417747 1186 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 AC006065.1-201ENST00000422539 802 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 MYO5BP3-201ENST00000431872 1279 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC8.26□□□□□ -1.09
HMGB1P09429 AC019185.3-201ENST00000438805 323 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 RPSAP48-201ENST00000466509 889 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 HMGB1P47-201ENST00000511281 589 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 ACTR6P1-201ENST00000514311 1104 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 AC026458.1-201ENST00000564330 438 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 EIF4A3P1-201ENST00000578499 647 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 AC024451.4-201ENST00000602578 752 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AC007255.2-201ENST00000604053 631 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC8.26□□□□□ -1.09
HMGB1P09429 AL356274.1-201ENST00000617064 410 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AL161420.1-201ENST00000619393 264 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AC018558.4-201ENST00000622153 281 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 LINC00216-201ENST00000623548 1126 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AC092159.4-201ENST00000624944 550 ntBASIC8.26□□□□□ -1.09
HMGB1P09429 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC8.26□□□□□ -1.09
HMGB1P09429 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC8.26□□□□□ -1.09
HMGB1P09429 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC8.26□□□□□ -1.09
HMGB1P09429 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
HMGB1P09429 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC8.26□□□□□ -1.09
HMGB1P09429 CDY19P-201ENST00000411668 1613 ntBASIC8.25□□□□□ -1.09
HMGB1P09429 CDY18P-201ENST00000438294 1609 ntBASIC8.25□□□□□ -1.09
HMGB1P09429 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC8.25□□□□□ -1.09
HMGB1P09429 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
HMGB1P09429 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
HMGB1P09429 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
HMGB1P09429 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
HMGB1P09429 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC8.25□□□□□ -1.09
HMGB1P09429 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC8.25□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms