Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC7.05□□□□□ -1.28
HDAC4P56524 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC7.05□□□□□ -1.28
HDAC4P56524 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC7.05□□□□□ -1.28
HDAC4P56524 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
HDAC4P56524 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDAC4P56524 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC7.05□□□□□ -1.28
HDAC4P56524 MIR378C-201ENST00000578683 81 ntBASIC7.05□□□□□ -1.28
HDAC4P56524 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC7.05□□□□□ -1.28
HDAC4P56524 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC7.05□□□□□ -1.28
HDAC4P56524 AL354950.1-201ENST00000614150 568 ntBASIC7.05□□□□□ -1.28
HDAC4P56524 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC7.05□□□□□ -1.28
HDAC4P56524 AC006328.2-201ENST00000623198 397 ntBASIC7.05□□□□□ -1.28
HDAC4P56524 AC012005.2-201ENST00000624333 397 ntBASIC7.05□□□□□ -1.28
HDAC4P56524 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HDAC4P56524 AC020658.2-201ENST00000559030 4020 ntBASIC7.05□□□□□ -1.28
HDAC4P56524 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
HDAC4P56524 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDAC4P56524 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
HDAC4P56524 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDAC4P56524 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 MAPK10-344ENST00000641718 3746 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC7.04□□□□□ -1.28
HDAC4P56524 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 AC130360.2-201ENST00000533477 1556 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC7.04□□□□□ -1.28
HDAC4P56524 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 RNU1-55P-201ENST00000365510 158 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC7.04□□□□□ -1.28
HDAC4P56524 RPLP1P10-201ENST00000413972 339 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC7.04□□□□□ -1.28
HDAC4P56524 GAPDHP57-201ENST00000424400 585 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 AC239367.3-201ENST00000428996 814 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 PAICSP2-201ENST00000429118 1150 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 RPS10P21-201ENST00000430654 475 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 OR6C71P-201ENST00000432580 913 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC7.04□□□□□ -1.28
HDAC4P56524 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 RN7SL561P-201ENST00000488553 281 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 CREM-242ENST00000490511 469 ntTSL 2 BASIC7.04□□□□□ -1.28
HDAC4P56524 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC7.04□□□□□ -1.28
HDAC4P56524 SUMO2P19-201ENST00000518920 295 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC7.04□□□□□ -1.28
HDAC4P56524 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC7.04□□□□□ -1.28
HDAC4P56524 OR4A13P-201ENST00000529316 942 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 AL109628.1-201ENST00000556877 366 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC7.04□□□□□ -1.28
HDAC4P56524 RN7SL199P-201ENST00000578752 281 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 RN7SL656P-201ENST00000579044 281 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC7.04□□□□□ -1.28
HDAC4P56524 RN7SL404P-201ENST00000582421 281 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 AC010333.3-201ENST00000615100 402 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 AP000577.1-201ENST00000624366 878 ntBASIC7.04□□□□□ -1.28
HDAC4P56524 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC7.04□□□□□ -1.28
HDAC4P56524 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC7.04□□□□□ -1.28
HDAC4P56524 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
HDAC4P56524 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC7.04□□□□□ -1.28
HDAC4P56524 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HDAC4P56524 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC7.03□□□□□ -1.28
HDAC4P56524 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.03□□□□□ -1.28
HDAC4P56524 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDAC4P56524 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDAC4P56524 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDAC4P56524 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDAC4P56524 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
HDAC4P56524 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
HDAC4P56524 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.03□□□□□ -1.28
HDAC4P56524 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDAC4P56524 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC7.03□□□□□ -1.28
HDAC4P56524 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HDAC4P56524 RNA5SP474-201ENST00000391234 90 ntBASIC7.03□□□□□ -1.28
HDAC4P56524 AL079341.1-201ENST00000404701 1207 ntBASIC7.03□□□□□ -1.28
HDAC4P56524 RPS20P25-201ENST00000412447 352 ntBASIC7.03□□□□□ -1.28
HDAC4P56524 YY1P1-201ENST00000427625 668 ntBASIC7.03□□□□□ -1.28
HDAC4P56524 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC7.03□□□□□ -1.28
HDAC4P56524 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC7.03□□□□□ -1.28
HDAC4P56524 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HDAC4P56524 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC7.03□□□□□ -1.28
HDAC4P56524 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC7.03□□□□□ -1.28
HDAC4P56524 PPP1R11P1-201ENST00000486095 376 ntBASIC7.03□□□□□ -1.28
HDAC4P56524 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms