Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 IGFL2-201ENST00000377693 607 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AL713922.1-201ENST00000416477 747 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AL451136.1-201ENST00000435399 325 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 SLAMF6P1-201ENST00000451067 602 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 MEF2AP1-201ENST00000454867 863 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC017007.1-201ENST00000511960 415 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC122713.1-201ENST00000518368 1015 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC100854.1-201ENST00000520351 341 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 TBCA-209ENST00000522370 435 ntTSL 3 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AP001803.1-201ENST00000525668 147 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC023080.1-201ENST00000551663 931 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 RN7SL131P-201ENST00000579043 256 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 MIR5010-201ENST00000582846 120 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AL512430.4-201ENST00000603085 613 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC092032.1-201ENST00000603090 165 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC091768.1-201ENST00000609258 930 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC007671.1-201ENST00000616957 830 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC025287.2-201ENST00000621911 668 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC087894.3-201ENST00000623682 349 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 RACK1-235ENST00000626067 564 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 SNORA16A-202ENST00000628458 135 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 AC243725.1-201ENST00000637164 436 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 ST7-203ENST00000393443 2360 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 EEF1A1P16-201ENST00000325349 1414 ntBASIC5.82□□□□□ -1.48
NKX3-1Q99801 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NKX3-1Q99801 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.82□□□□□ -1.48
NKX3-1Q99801 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AL157831.2-201ENST00000564681 3095 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 DPY19L1P1-201ENST00000417811 2594 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AL359715.1-201ENST00000404330 555 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 SNORA11D-201ENST00000408548 128 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 SNORA11E-201ENST00000408778 128 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 NRIR-202ENST00000414795 506 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 CRYGGP-201ENST00000443337 145 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 RPL23AP28-201ENST00000448062 470 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms