Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXD4P09016 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 NPM1P23-201ENST00000440193 849 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXD4P09016 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXD4P09016 RPL7AP71-201ENST00000451120 739 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 AC002075.1-201ENST00000457396 676 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 UOX-201ENST00000471089 899 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 KATNBL1P4-201ENST00000503545 918 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXD4P09016 AC026774.2-201ENST00000513990 1098 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 MTCYBP44-201ENST00000514835 823 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 RNA5SP473-201ENST00000516402 125 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXD4P09016 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.2□□□□□ -1.42
HOXD4P09016 AP001000.1-201ENST00000526843 742 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
HOXD4P09016 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXD4P09016 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXD4P09016 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.2□□□□□ -1.42
HOXD4P09016 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 AL365223.1-201ENST00000574864 1297 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 MIR4271-201ENST00000582451 67 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
HOXD4P09016 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC6.2□□□□□ -1.42
HOXD4P09016 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.2□□□□□ -1.42
HOXD4P09016 AP003789.1-201ENST00000617737 605 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 MIR7854-201ENST00000620068 65 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 AC127071.2-201ENST00000623293 527 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
HOXD4P09016 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXD4P09016 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
HOXD4P09016 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXD4P09016 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXD4P09016 TMCC1P1-201ENST00000518897 1980 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
HOXD4P09016 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 AP000432.2-201ENST00000624164 2048 ntBASIC6.2□□□□□ -1.42
HOXD4P09016 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXD4P09016 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
HOXD4P09016 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 PPBPP2-201ENST00000513150 1362 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 AC010168.2-201ENST00000562691 5428 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HOXD4P09016 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 AC010894.1-201ENST00000313760 361 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 RN7SKP250-201ENST00000363924 321 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 AL590762.1-201ENST00000391782 432 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 RNA5SP155-201ENST00000411154 129 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXD4P09016 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 RPS10P21-201ENST00000430654 475 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 LSM3P3-201ENST00000436601 306 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 NMNAT1P3-201ENST00000457517 888 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXD4P09016 RN7SL654P-201ENST00000479178 292 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 RPL23AP8-201ENST00000479812 475 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXD4P09016 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXD4P09016 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXD4P09016 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXD4P09016 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.19□□□□□ -1.42
HOXD4P09016 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXD4P09016 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.19□□□□□ -1.42
HOXD4P09016 MIR4310-201ENST00000582950 57 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC6.19□□□□□ -1.42
HOXD4P09016 AL390877.1-201ENST00000605704 214 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 AL138960.1-201ENST00000613838 513 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 MIR6503-201ENST00000622884 86 ntBASIC6.19□□□□□ -1.42
HOXD4P09016 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
HOXD4P09016 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HOXD4P09016 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms