Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC129502.1-201ENST00000623261 1654 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC099654.3-201ENST00000447087 1546 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 RAB5CP1-201ENST00000395972 580 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 RN7SKP148-201ENST00000410179 275 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AL353626.3-201ENST00000413399 657 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 MTND4LP17-201ENST00000414607 293 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC018804.1-201ENST00000430381 618 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AL034399.1-201ENST00000451535 380 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC010878.1-201ENST00000456500 1047 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AP000805.1-201ENST00000471604 784 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC092349.1-201ENST00000504903 310 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 MRPL57P6-201ENST00000506570 309 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC112225.1-201ENST00000508230 297 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 SCARNA11.1-201ENST00000516918 132 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC113191.1-201ENST00000517759 403 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC026688.1-201ENST00000520639 1168 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AL008582.1-201ENST00000609612 442 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 HTR1DP1-201ENST00000616500 888 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 HSPD1P1-201ENST00000503199 1726 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 NCOA4P2-201ENST00000340589 1813 ntBASIC7.03□□□□□ -1.28
DKK3Q9UBP4 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
DKK3Q9UBP4 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC7.02□□□□□ -1.28
DKK3Q9UBP4 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC7.02□□□□□ -1.28
DKK3Q9UBP4 AC006600.2-201ENST00000624834 2506 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 MIR621-201ENST00000384919 96 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 RPLP1P10-201ENST00000413972 339 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AP000949.1-201ENST00000438328 629 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AL096803.1-201ENST00000456921 1021 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 RN7SL492P-201ENST00000460700 295 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 NFU1-207ENST00000462320 558 ntTSL 4 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AK5-208ENST00000478255 556 ntTSL 2 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AC131233.1-201ENST00000479200 955 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AC147055.1-201ENST00000509261 750 ntBASIC7.02□□□□□ -1.29
DKK3Q9UBP4 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
DKK3Q9UBP4 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms