Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LINC01173-201ENST00000629370 331 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.66□□□□□ -1.5
CDX1P47902 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 MFSD8-256ENST00000641949 1640 ntBASIC5.66□□□□□ -1.5
CDX1P47902 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CDX1P47902 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 AC090643.1-201ENST00000623600 3100 ntBASIC5.65□□□□□ -1.5
CDX1P47902 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CDX1P47902 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CDX1P47902 AL592429.1-201ENST00000403909 1473 ntBASIC5.65□□□□□ -1.5
CDX1P47902 CREM-216ENST00000429130 1476 ntTSL 5 BASIC5.65□□□□□ -1.5
CDX1P47902 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CDX1P47902 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 ICE2P1-201ENST00000512800 1849 ntBASIC5.65□□□□□ -1.5
CDX1P47902 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.65□□□□□ -1.5
CDX1P47902 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
CDX1P47902 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.65□□□□□ -1.5
CDX1P47902 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
CDX1P47902 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CDX1P47902 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CDX1P47902 RNU4-81P-201ENST00000363561 144 ntBASIC5.65□□□□□ -1.5
CDX1P47902 RNA5SP302-201ENST00000364896 100 ntBASIC5.65□□□□□ -1.5
CDX1P47902 SNORA70.8-201ENST00000384231 136 ntBASIC5.65□□□□□ -1.5
CDX1P47902 MIR431-201ENST00000385266 114 ntBASIC5.65□□□□□ -1.5
CDX1P47902 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CDX1P47902 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.65□□□□□ -1.5
CDX1P47902 ERMN-202ENST00000409216 746 ntTSL 4 BASIC5.65□□□□□ -1.5
CDX1P47902 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.65□□□□□ -1.5
CDX1P47902 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.65□□□□□ -1.5
CDX1P47902 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC5.65□□□□□ -1.5
CDX1P47902 AC016687.1-201ENST00000482574 353 ntBASIC5.65□□□□□ -1.5
CDX1P47902 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC5.65□□□□□ -1.5
CDX1P47902 IGKV2-19-201ENST00000518132 283 ntBASIC5.65□□□□□ -1.5
CDX1P47902 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC5.65□□□□□ -1.5
CDX1P47902 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.65□□□□□ -1.5
CDX1P47902 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC5.65□□□□□ -1.5
CDX1P47902 OR7E161P-201ENST00000533722 967 ntBASIC5.65□□□□□ -1.5
CDX1P47902 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC5.65□□□□□ -1.5
CDX1P47902 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.65□□□□□ -1.5
CDX1P47902 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC5.65□□□□□ -1.5
CDX1P47902 PRR13P5-201ENST00000596581 442 ntBASIC5.65□□□□□ -1.5
CDX1P47902 AL512430.4-201ENST00000603085 613 ntBASIC5.65□□□□□ -1.5
CDX1P47902 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC5.65□□□□□ -1.5
CDX1P47902 AL136985.2-201ENST00000607372 535 ntBASIC5.65□□□□□ -1.5
CDX1P47902 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC5.65□□□□□ -1.5
CDX1P47902 AL121782.1-201ENST00000611242 413 ntBASIC5.65□□□□□ -1.5
CDX1P47902 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC5.65□□□□□ -1.5
CDX1P47902 AL161931.1-201ENST00000612768 246 ntBASIC5.65□□□□□ -1.5
CDX1P47902 AL353684.1-201ENST00000622677 1120 ntBASIC5.65□□□□□ -1.5
CDX1P47902 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC5.65□□□□□ -1.5
CDX1P47902 OR7E161P-202ENST00000641994 1033 ntBASIC5.65□□□□□ -1.5
CDX1P47902 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
CDX1P47902 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC5.65□□□□□ -1.51
CDX1P47902 CDY7P-201ENST00000429883 1604 ntBASIC5.65□□□□□ -1.51
CDX1P47902 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
CDX1P47902 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.65□□□□□ -1.51
CDX1P47902 TRIM64EP-201ENST00000531233 1307 ntBASIC5.65□□□□□ -1.51
CDX1P47902 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
CDX1P47902 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CDX1P47902 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC5.65□□□□□ -1.51
CDX1P47902 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
CDX1P47902 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC5.65□□□□□ -1.51
CDX1P47902 AC018628.1-201ENST00000624147 3819 ntBASIC5.65□□□□□ -1.51
CDX1P47902 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
CDX1P47902 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
CDX1P47902 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
CDX1P47902 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CDX1P47902 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC5.64□□□□□ -1.51
CDX1P47902 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CDX1P47902 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.64□□□□□ -1.51
CDX1P47902 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CDX1P47902 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CDX1P47902 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.64□□□□□ -1.51
CDX1P47902 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CDX1P47902 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CDX1P47902 AC011455.2-201ENST00000599320 3336 ntBASIC5.64□□□□□ -1.51
CDX1P47902 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CDX1P47902 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC5.64□□□□□ -1.51
CDX1P47902 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC5.64□□□□□ -1.51
CDX1P47902 PSORS1C1-201ENST00000259881 908 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CDX1P47902 NPM1P14-201ENST00000343743 866 ntBASIC5.64□□□□□ -1.51
CDX1P47902 ALDH1A1-202ENST00000376939 822 ntTSL 5 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms