Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RNU6-84P-201ENST00000607737 102 ntBASIC5.86□□□□□ -1.47
SSX3Q99909 AP005329.3-201ENST00000609924 686 ntBASIC5.86□□□□□ -1.47
SSX3Q99909 AL031777.2-201ENST00000611953 196 ntBASIC5.86□□□□□ -1.47
SSX3Q99909 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC5.86□□□□□ -1.47
SSX3Q99909 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 AC004014.2-201ENST00000623718 5122 ntBASIC5.86□□□□□ -1.47
SSX3Q99909 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
SSX3Q99909 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.86□□□□□ -1.47
SSX3Q99909 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 AC011455.2-201ENST00000599320 3336 ntBASIC5.86□□□□□ -1.47
SSX3Q99909 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SSX3Q99909 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.85□□□□□ -1.47
SSX3Q99909 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC5.85□□□□□ -1.47
SSX3Q99909 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 CA10-204ENST00000570565 2276 ntTSL 5 BASIC5.85□□□□□ -1.47
SSX3Q99909 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC5.85□□□□□ -1.47
SSX3Q99909 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.85□□□□□ -1.47
SSX3Q99909 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.85□□□□□ -1.47
SSX3Q99909 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SSX3Q99909 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SSX3Q99909 RN7SKP174-201ENST00000363803 330 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 ALDH1A1-202ENST00000376939 822 ntTSL 5 BASIC5.85□□□□□ -1.47
SSX3Q99909 FAUP2-201ENST00000394301 401 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 SOD1P1-201ENST00000407803 440 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 SNORA11D-201ENST00000408548 128 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 SNORA11E-201ENST00000408778 128 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AL662791.3-201ENST00000413771 776 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AL593856.1-201ENST00000419949 805 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 OSTCP2-201ENST00000437956 444 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 NACAP6-201ENST00000509572 622 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC5.85□□□□□ -1.47
SSX3Q99909 AC106800.2-201ENST00000514009 1103 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AC073581.1-201ENST00000519036 575 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 PDCL3P1-201ENST00000534575 734 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 BMS1P15-201ENST00000554269 1141 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AC007614.3-201ENST00000564875 654 ntTSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC5.85□□□□□ -1.47
SSX3Q99909 AC115989.2-201ENST00000578640 563 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 MIR4433B-201ENST00000581329 102 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 RN7SL178P-201ENST00000582930 304 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC5.85□□□□□ -1.47
SSX3Q99909 AL138960.1-201ENST00000613838 513 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC5.85□□□□□ -1.47
SSX3Q99909 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC5.85□□□□□ -1.47
SSX3Q99909 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
SSX3Q99909 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SSX3Q99909 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 AL513548.1-201ENST00000562904 1724 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 AL133320.1-201ENST00000621423 2352 ntBASIC5.85□□□□□ -1.47
SSX3Q99909 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC5.85□□□□□ -1.47
SSX3Q99909 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SSX3Q99909 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
SSX3Q99909 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SSX3Q99909 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SSX3Q99909 RBMY1A3P-201ENST00000382670 1404 ntBASIC5.84□□□□□ -1.47
SSX3Q99909 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
SSX3Q99909 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
SSX3Q99909 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SSX3Q99909 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.84□□□□□ -1.47
SSX3Q99909 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC5.84□□□□□ -1.47
SSX3Q99909 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SSX3Q99909 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC5.84□□□□□ -1.47
SSX3Q99909 MIPEPP2-201ENST00000422560 1819 ntBASIC5.84□□□□□ -1.47
SSX3Q99909 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SSX3Q99909 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SSX3Q99909 RNA5SP429-201ENST00000363688 109 ntBASIC5.84□□□□□ -1.47
SSX3Q99909 RNA5SP302-201ENST00000364896 100 ntBASIC5.84□□□□□ -1.47
SSX3Q99909 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.84□□□□□ -1.47
SSX3Q99909 RBBP4P4-201ENST00000398588 1289 ntBASIC5.84□□□□□ -1.47
SSX3Q99909 AC024937.2-201ENST00000411669 1242 ntBASIC5.84□□□□□ -1.47
SSX3Q99909 NRIR-202ENST00000414795 506 ntTSL 3 BASIC5.84□□□□□ -1.47
SSX3Q99909 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.84□□□□□ -1.47
SSX3Q99909 AC134879.1-201ENST00000426062 394 ntBASIC5.84□□□□□ -1.47
SSX3Q99909 G6PC2-204ENST00000429379 645 ntTSL 2 BASIC5.84□□□□□ -1.47
SSX3Q99909 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms