Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 WDR45BP1-201ENST00000583470 1029 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC006504.3-201ENST00000586818 523 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC060766.2-201ENST00000588235 334 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 BNIP3P26-201ENST00000600827 554 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AP001267.4-201ENST00000602598 545 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC7.76□□□□□ -1.17
MSX1P28360 AL021368.3-201ENST00000607119 578 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AL121928.1-201ENST00000608017 521 ntBASIC7.76□□□□□ -1.17
MSX1P28360 LINC00635-221ENST00000609366 784 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 GNAS-AS1_2.1-201ENST00000613404 114 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC010538.1-201ENST00000615131 663 ntBASIC7.76□□□□□ -1.17
MSX1P28360 FAM74A6-203ENST00000615956 481 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 LINC01176-202ENST00000628121 716 ntTSL 3 BASIC7.76□□□□□ -1.17
MSX1P28360 LINC01358-208ENST00000634569 1030 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 MIR3191-201ENST00000636300 76 ntBASIC7.76□□□□□ -1.17
MSX1P28360 AC079298.1-201ENST00000625026 1619 ntBASIC7.76□□□□□ -1.17
MSX1P28360 MORF4L2-203ENST00000422154 1983 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 MSL3-201ENST00000312196 2345 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 CCDC174-202ENST00000383794 2942 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 AMBN-202ENST00000449493 1512 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 CPB1-208ENST00000491148 1773 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
MSX1P28360 AC009044.1-201ENST00000624577 1798 ntBASIC7.76□□□□□ -1.17
MSX1P28360 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC7.76□□□□□ -1.17
MSX1P28360 PLRG1-201ENST00000302078 1673 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 NR1I2-203ENST00000466380 4306 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 GFRAL-201ENST00000340465 1911 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 ZSCAN16-201ENST00000340487 1328 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
MSX1P28360 OR7E25P-202ENST00000641088 5937 ntBASIC7.76□□□□□ -1.17
MSX1P28360 GBAP1-202ENST00000459805 2922 ntTSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 MPI-213ENST00000566377 2809 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 AC131971.1-201ENST00000332881 1482 ntBASIC7.75□□□□□ -1.17
MSX1P28360 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 LDB2-202ENST00000441778 2476 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 GIN1-201ENST00000399004 3229 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 GABPB1-205ENST00000429662 1392 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 NAALAD2-204ENST00000525171 1613 ntTSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 SLC26A9-201ENST00000340781 4510 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 SIRT5-205ENST00000606117 3922 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 ENTPD5-201ENST00000334696 5842 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 CABLES1-202ENST00000400473 1544 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
MSX1P28360 RNU6-348P-201ENST00000384386 107 ntBASIC7.75□□□□□ -1.17
MSX1P28360 MT-TS1-201ENST00000387416 69 ntBASIC7.75□□□□□ -1.17
MSX1P28360 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
MSX1P28360 CIR1P3-201ENST00000405137 479 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC002524.1-201ENST00000411687 547 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 AC073367.1-201ENST00000421480 697 ntTSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 CDH13-203ENST00000431540 831 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 LINC01852-201ENST00000434223 967 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
MSX1P28360 AC239367.1-201ENST00000439389 936 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 AC092431.2-201ENST00000441658 318 ntBASIC7.75□□□□□ -1.17
MSX1P28360 RPL23AP76-201ENST00000441860 458 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC016908.1-201ENST00000442571 1219 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC090954.1-201ENST00000445502 361 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 AL021154.1-201ENST00000451217 456 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 RPL5P13-201ENST00000462840 709 ntBASIC7.75□□□□□ -1.17
MSX1P28360 RN7SL757P-201ENST00000466709 301 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC091951.2-201ENST00000500762 203 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC117522.3-201ENST00000507974 584 ntBASIC7.75□□□□□ -1.17
MSX1P28360 MTND3P22-201ENST00000510932 243 ntBASIC7.75□□□□□ -1.17
MSX1P28360 RN7SKP298-201ENST00000515950 94 ntBASIC7.75□□□□□ -1.17
MSX1P28360 RNA5SP422-201ENST00000516778 111 ntBASIC7.75□□□□□ -1.17
MSX1P28360 STMN2-203ENST00000518491 585 ntTSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 IGHVII-30-1-201ENST00000522218 301 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC083973.1-201ENST00000523459 590 ntTSL 2 BASIC7.75□□□□□ -1.17
MSX1P28360 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC7.75□□□□□ -1.17
MSX1P28360 ACTN1-AS1-201ENST00000553944 484 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC7.75□□□□□ -1.17
MSX1P28360 AC007952.7-201ENST00000583141 757 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AC087393.3-201ENST00000584971 166 ntBASIC7.75□□□□□ -1.17
MSX1P28360 SNRPCP20-201ENST00000588011 210 ntBASIC7.75□□□□□ -1.17
MSX1P28360 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC7.75□□□□□ -1.17
MSX1P28360 AC015871.2-201ENST00000603605 948 ntBASIC7.75□□□□□ -1.17
MSX1P28360 BNIP3P9-201ENST00000603714 553 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AP000942.4-201ENST00000604811 241 ntBASIC7.75□□□□□ -1.17
MSX1P28360 AP000860.1-201ENST00000605250 559 ntBASIC7.75□□□□□ -1.17
MSX1P28360 FAM30B-201ENST00000611556 397 ntBASIC7.75□□□□□ -1.17
MSX1P28360 RBM22P4-201ENST00000613117 1240 ntBASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms