Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 C1QBPP2-201ENST00000528754 825 ntBASIC21.33■■□□□ 1.01
SIX4Q9UIU6 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX4Q9UIU6 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
SIX4Q9UIU6 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1
SIX4Q9UIU6 TCF3P1-201ENST00000423021 1937 ntBASIC21.33■■□□□ 1
SIX4Q9UIU6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SIX4Q9UIU6 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.32■■□□□ 1
SIX4Q9UIU6 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX4Q9UIU6 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
SIX4Q9UIU6 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.32■■□□□ 1
SIX4Q9UIU6 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.32■■□□□ 1
SIX4Q9UIU6 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SIX4Q9UIU6 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.32■■□□□ 1
SIX4Q9UIU6 AC142381.4-202ENST00000563973 229 ntBASIC21.32■■□□□ 1
SIX4Q9UIU6 AC124016.1-201ENST00000609552 612 ntBASIC21.32■■□□□ 1
SIX4Q9UIU6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.32■■□□□ 1
SIX4Q9UIU6 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SIX4Q9UIU6 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX4Q9UIU6 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SIX4Q9UIU6 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.32■■□□□ 1
SIX4Q9UIU6 TFP1-202ENST00000475455 1573 ntBASIC21.31■■□□□ 1
SIX4Q9UIU6 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.31■■□□□ 1
SIX4Q9UIU6 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SIX4Q9UIU6 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SIX4Q9UIU6 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SIX4Q9UIU6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.31■■□□□ 1
SIX4Q9UIU6 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.31■■□□□ 1
SIX4Q9UIU6 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
SIX4Q9UIU6 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SIX4Q9UIU6 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.31■■□□□ 1
SIX4Q9UIU6 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX4Q9UIU6 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.3■■□□□ 1
SIX4Q9UIU6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX4Q9UIU6 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SIX4Q9UIU6 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.3■■□□□ 1
SIX4Q9UIU6 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
SIX4Q9UIU6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.3■■□□□ 1
SIX4Q9UIU6 AL158047.1-201ENST00000445918 881 ntBASIC21.3■■□□□ 1
SIX4Q9UIU6 AC133681.1-201ENST00000465482 601 ntBASIC21.3■■□□□ 1
SIX4Q9UIU6 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.3■■□□□ 1
SIX4Q9UIU6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.3■■□□□ 1
SIX4Q9UIU6 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SIX4Q9UIU6 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SIX4Q9UIU6 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX4Q9UIU6 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SIX4Q9UIU6 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.3■■□□□ 1
SIX4Q9UIU6 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
SIX4Q9UIU6 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.29■■□□□ 1
SIX4Q9UIU6 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.29■■□□□ 1
SIX4Q9UIU6 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.29■■□□□ 1
SIX4Q9UIU6 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.29■■□□□ 1
SIX4Q9UIU6 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SIX4Q9UIU6 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SIX4Q9UIU6 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 KRASP1-201ENST00000407852 552 ntBASIC21.29■■□□□ 1
SIX4Q9UIU6 AC239809.2-201ENST00000415381 517 ntBASIC21.29■■□□□ 1
SIX4Q9UIU6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.29■■□□□ 1
SIX4Q9UIU6 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.29■■□□□ 1
SIX4Q9UIU6 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.29■■□□□ 1
SIX4Q9UIU6 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX4Q9UIU6 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SIX4Q9UIU6 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms