Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 HLA-G-202ENST00000376815 851 ntBASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 HLA-G-203ENST00000376818 1127 ntBASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 CROCCP5-201ENST00000436658 830 ntBASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 AC092666.2-201ENST00000613287 246 ntBASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 AL050303.2-201ENST00000619798 666 ntBASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
TRIM54Q9BYV2 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 KRT8P20-201ENST00000423953 1409 ntBASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 KRT8P17-201ENST00000453110 1448 ntBASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 BX276092.2-201ENST00000417668 665 ntBASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 BX119927.1-201ENST00000636596 1552 ntBASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
TRIM54Q9BYV2 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 AC083906.2-201ENST00000511578 360 ntBASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 AL031963.3-201ENST00000606441 850 ntBASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 KRT16P6-202ENST00000425692 1426 ntBASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM54Q9BYV2 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM54Q9BYV2 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 SLC29A4P1-201ENST00000398760 971 ntBASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 TCF3P1-201ENST00000423021 1937 ntBASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM54Q9BYV2 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM54Q9BYV2 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM54Q9BYV2 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM54Q9BYV2 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM54Q9BYV2 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM54Q9BYV2 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM54Q9BYV2 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM54Q9BYV2 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms