Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 COX11P1-201ENST00000489116 835 ntBASIC19.81■□□□□ 0.76
VPS13AQ96RL7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.81■□□□□ 0.76
VPS13AQ96RL7 AC012313.10-201ENST00000623509 926 ntBASIC19.81■□□□□ 0.76
VPS13AQ96RL7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 AL121603.2-201ENST00000557373 2117 ntBASIC19.8■□□□□ 0.76
VPS13AQ96RL7 PTBP1P-201ENST00000554374 1601 ntBASIC19.8■□□□□ 0.76
VPS13AQ96RL7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS13AQ96RL7 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 AC008622.2-201ENST00000617006 1229 ntBASIC19.79■□□□□ 0.76
VPS13AQ96RL7 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 AC023632.3-201ENST00000521633 145 ntBASIC19.79■□□□□ 0.76
VPS13AQ96RL7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS13AQ96RL7 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS13AQ96RL7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 AL845331.1-201ENST00000424978 1190 ntBASIC19.77■□□□□ 0.76
VPS13AQ96RL7 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 VENTXP5-201ENST00000523979 775 ntBASIC19.77■□□□□ 0.76
VPS13AQ96RL7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS13AQ96RL7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.77■□□□□ 0.75
VPS13AQ96RL7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS13AQ96RL7 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS13AQ96RL7 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.77■□□□□ 0.75
VPS13AQ96RL7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
VPS13AQ96RL7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms