Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
VMP1Q96GC9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VMP1Q96GC9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VMP1Q96GC9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
VMP1Q96GC9 AC027702.1-201ENST00000563810 1770 ntBASIC18.98■□□□□ 0.63
VMP1Q96GC9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 AL158211.5-201ENST00000623583 2518 ntBASIC18.98■□□□□ 0.63
VMP1Q96GC9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 AL356652.1-201ENST00000615962 565 ntBASIC18.98■□□□□ 0.63
VMP1Q96GC9 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.98■□□□□ 0.63
VMP1Q96GC9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VMP1Q96GC9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 AC073314.1-201ENST00000568729 2216 ntBASIC18.97■□□□□ 0.63
VMP1Q96GC9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VMP1Q96GC9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.97■□□□□ 0.63
VMP1Q96GC9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 CD99P1-205ENST00000527459 561 ntBASIC18.96■□□□□ 0.63
VMP1Q96GC9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms