Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 KRT18P1-202ENST00000452408 1331 ntBASIC20.38■□□□□ 0.85
TTC28Q96AY4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 TSPY17P-201ENST00000450329 467 ntBASIC20.37■□□□□ 0.85
TTC28Q96AY4 AC079776.4-201ENST00000511039 504 ntBASIC20.37■□□□□ 0.85
TTC28Q96AY4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.37■□□□□ 0.85
TTC28Q96AY4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.37■□□□□ 0.85
TTC28Q96AY4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
TTC28Q96AY4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TTC28Q96AY4 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
TTC28Q96AY4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TTC28Q96AY4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TTC28Q96AY4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.37■□□□□ 0.85
TTC28Q96AY4 NUS1P1-201ENST00000446295 882 ntBASIC20.37■□□□□ 0.85
TTC28Q96AY4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
TTC28Q96AY4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TTC28Q96AY4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 PMS2P2-201ENST00000425039 1128 ntBASIC20.36■□□□□ 0.85
TTC28Q96AY4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 AL353719.1-201ENST00000566847 864 ntBASIC20.36■□□□□ 0.85
TTC28Q96AY4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TTC28Q96AY4 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.36■□□□□ 0.85
TTC28Q96AY4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 KRT18P31-201ENST00000506277 1292 ntBASIC20.35■□□□□ 0.85
TTC28Q96AY4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 KRT16P4-201ENST00000453883 522 ntBASIC20.35■□□□□ 0.85
TTC28Q96AY4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.35■□□□□ 0.85
TTC28Q96AY4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TTC28Q96AY4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.34■□□□□ 0.85
TTC28Q96AY4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 STARP1-201ENST00000397973 869 ntBASIC20.34■□□□□ 0.85
TTC28Q96AY4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.34■□□□□ 0.85
TTC28Q96AY4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.34■□□□□ 0.85
TTC28Q96AY4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 AP000523.1-201ENST00000398242 1049 ntBASIC20.34■□□□□ 0.85
TTC28Q96AY4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
TTC28Q96AY4 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TTC28Q96AY4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
TTC28Q96AY4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
TTC28Q96AY4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.33■□□□□ 0.85
TTC28Q96AY4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.33■□□□□ 0.85
TTC28Q96AY4 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.33■□□□□ 0.85
TTC28Q96AY4 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TTC28Q96AY4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
TTC28Q96AY4 BX119927.1-201ENST00000636596 1552 ntBASIC20.33■□□□□ 0.85
TTC28Q96AY4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.33■□□□□ 0.85
TTC28Q96AY4 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TTC28Q96AY4 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TTC28Q96AY4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.33■□□□□ 0.84
TTC28Q96AY4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TTC28Q96AY4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TTC28Q96AY4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
TTC28Q96AY4 MIR564-202ENST00000385049 94 ntBASIC20.33■□□□□ 0.84
TTC28Q96AY4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
TTC28Q96AY4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.33■□□□□ 0.84
TTC28Q96AY4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms