Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 YBX1P2-201ENST00000489612 999 ntBASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 FAM8A6P-201ENST00000407496 1135 ntBASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 AC091076.1-201ENST00000610741 619 ntBASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC88AQ3V6T2 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 STK25-205ENST00000405883 1904 ntTSL 2 BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 ANKRD20A18P-201ENST00000359341 492 ntBASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 DGCR10-201ENST00000609839 495 ntBASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 ABBA01031674.1-201ENST00000635145 728 ntBASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 KRT8P36-201ENST00000489121 1440 ntBASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC24.48■■□□□ 1.51
CCDC88AQ3V6T2 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 AL359075.1-203ENST00000462729 1002 ntBASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 AC026271.3-201ENST00000571884 352 ntBASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC24.47■■□□□ 1.51
CCDC88AQ3V6T2 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 MESTP1-201ENST00000404287 994 ntBASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 LINC00565-201ENST00000562710 2331 ntBASIC24.46■■□□□ 1.51
CCDC88AQ3V6T2 MED25-212ENST00000618715 1467 ntTSL 5 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 PTBP1P-201ENST00000554374 1601 ntBASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 ISCU-203ENST00000431221 799 ntTSL 2 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC24.45■■□□□ 1.5
CCDC88AQ3V6T2 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 INGX-201ENST00000359239 846 ntBASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 KRT126P-201ENST00000549467 1181 ntBASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 AF106564.1-201ENST00000607058 2553 ntBASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
CCDC88AQ3V6T2 FSCN1P1-201ENST00000568912 1481 ntBASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 AC009947.2-201ENST00000444014 672 ntBASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 AC097488.1-201ENST00000507834 756 ntBASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms