Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
H3F3AP84243 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.81■□□□□ 0.44
H3F3AP84243 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.8■□□□□ 0.44
H3F3AP84243 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
H3F3AP84243 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.8■□□□□ 0.44
H3F3AP84243 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.8■□□□□ 0.44
H3F3AP84243 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
H3F3AP84243 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.8■□□□□ 0.44
H3F3AP84243 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.8■□□□□ 0.44
H3F3AP84243 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.8■□□□□ 0.44
H3F3AP84243 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.8■□□□□ 0.44
H3F3AP84243 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
H3F3AP84243 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.79■□□□□ 0.44
H3F3AP84243 AC073130.3-201ENST00000624389 2278 ntBASIC17.79■□□□□ 0.44
H3F3AP84243 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 AC112907.3-201ENST00000577781 2400 ntBASIC17.79■□□□□ 0.44
H3F3AP84243 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
H3F3AP84243 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.79■□□□□ 0.44
H3F3AP84243 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.79■□□□□ 0.44
H3F3AP84243 CD99P1-205ENST00000527459 561 ntBASIC17.79■□□□□ 0.44
H3F3AP84243 AC008403.3-201ENST00000598924 454 ntBASIC17.79■□□□□ 0.44
H3F3AP84243 AC120498.8-201ENST00000614275 531 ntBASIC17.79■□□□□ 0.44
H3F3AP84243 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.79■□□□□ 0.44
H3F3AP84243 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
H3F3AP84243 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
H3F3AP84243 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
H3F3AP84243 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.78■□□□□ 0.44
H3F3AP84243 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
H3F3AP84243 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
H3F3AP84243 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.78■□□□□ 0.44
H3F3AP84243 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
H3F3AP84243 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
H3F3AP84243 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.78■□□□□ 0.44
H3F3AP84243 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
H3F3AP84243 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.78■□□□□ 0.44
H3F3AP84243 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.78■□□□□ 0.44
H3F3AP84243 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.78■□□□□ 0.44
H3F3AP84243 SOX15-203ENST00000570788 1093 ntBASIC17.78■□□□□ 0.44
H3F3AP84243 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.78■□□□□ 0.44
H3F3AP84243 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.78■□□□□ 0.44
H3F3AP84243 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.78■□□□□ 0.44
H3F3AP84243 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
H3F3AP84243 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
H3F3AP84243 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.78■□□□□ 0.44
H3F3AP84243 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.77■□□□□ 0.44
H3F3AP84243 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
H3F3AP84243 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
H3F3AP84243 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
H3F3AP84243 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
H3F3AP84243 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.77■□□□□ 0.44
H3F3AP84243 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
H3F3AP84243 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
H3F3AP84243 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.77■□□□□ 0.44
H3F3AP84243 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.77■□□□□ 0.44
H3F3AP84243 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
H3F3AP84243 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.77■□□□□ 0.44
H3F3AP84243 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.77■□□□□ 0.44
H3F3AP84243 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
H3F3AP84243 AC008687.6-201ENST00000596318 630 ntBASIC17.77■□□□□ 0.44
H3F3AP84243 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.77■□□□□ 0.44
H3F3AP84243 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
H3F3AP84243 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
H3F3AP84243 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
H3F3AP84243 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.77■□□□□ 0.43
H3F3AP84243 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
H3F3AP84243 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms