Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 AL162377.1-201ENST00000618844 1793 ntBASIC31.68■■■□□ 2.66
CLIP1P30622 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CLIP1P30622 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC31.68■■■□□ 2.66
CLIP1P30622 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CLIP1P30622 HTR7P1-201ENST00000538670 1336 ntBASIC31.68■■■□□ 2.66
CLIP1P30622 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CLIP1P30622 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
CLIP1P30622 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
CLIP1P30622 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CLIP1P30622 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC31.67■■■□□ 2.66
CLIP1P30622 MIR4785-201ENST00000585005 73 ntBASIC31.67■■■□□ 2.66
CLIP1P30622 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC31.67■■■□□ 2.66
CLIP1P30622 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC31.67■■■□□ 2.66
CLIP1P30622 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC31.67■■■□□ 2.66
CLIP1P30622 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CLIP1P30622 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CLIP1P30622 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC31.67■■■□□ 2.66
CLIP1P30622 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC31.66■■■□□ 2.66
CLIP1P30622 AF186192.3-201ENST00000583427 947 ntBASIC31.66■■■□□ 2.66
CLIP1P30622 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC31.66■■■□□ 2.66
CLIP1P30622 AP001412.1-201ENST00000608405 714 ntBASIC31.66■■■□□ 2.66
CLIP1P30622 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC31.66■■■□□ 2.66
CLIP1P30622 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC31.66■■■□□ 2.66
CLIP1P30622 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC31.66■■■□□ 2.66
CLIP1P30622 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC31.66■■■□□ 2.66
CLIP1P30622 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC31.66■■■□□ 2.66
CLIP1P30622 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
CLIP1P30622 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CLIP1P30622 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC31.65■■■□□ 2.66
CLIP1P30622 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC31.65■■■□□ 2.66
CLIP1P30622 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC31.65■■■□□ 2.66
CLIP1P30622 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 KRT17P2-201ENST00000300992 1314 ntBASIC31.65■■■□□ 2.66
CLIP1P30622 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC31.65■■■□□ 2.66
CLIP1P30622 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 FDX2-207ENST00000494368 584 ntTSL 4 BASIC31.65■■■□□ 2.66
CLIP1P30622 PENK-204ENST00000518770 863 ntTSL 2 BASIC31.65■■■□□ 2.66
CLIP1P30622 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC31.65■■■□□ 2.66
CLIP1P30622 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC31.65■■■□□ 2.66
CLIP1P30622 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC31.65■■■□□ 2.66
CLIP1P30622 REXO1L12P-201ENST00000622156 912 ntBASIC31.65■■■□□ 2.66
CLIP1P30622 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC31.65■■■□□ 2.66
CLIP1P30622 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CLIP1P30622 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC31.64■■■□□ 2.66
CLIP1P30622 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC31.64■■■□□ 2.66
CLIP1P30622 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CLIP1P30622 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC31.64■■■□□ 2.66
CLIP1P30622 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CLIP1P30622 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CLIP1P30622 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC31.64■■■□□ 2.66
CLIP1P30622 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
CLIP1P30622 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
CLIP1P30622 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC31.64■■■□□ 2.65
CLIP1P30622 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
CLIP1P30622 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CLIP1P30622 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC31.63■■■□□ 2.65
CLIP1P30622 YBX1P10-201ENST00000444752 975 ntBASIC31.63■■■□□ 2.65
CLIP1P30622 C1QL1P1-201ENST00000568105 661 ntBASIC31.63■■■□□ 2.65
CLIP1P30622 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC31.63■■■□□ 2.65
CLIP1P30622 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC31.63■■■□□ 2.65
CLIP1P30622 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC31.63■■■□□ 2.65
CLIP1P30622 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC31.63■■■□□ 2.65
CLIP1P30622 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CLIP1P30622 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CLIP1P30622 MOK-225ENST00000522867 1883 ntTSL 5 BASIC31.63■■■□□ 2.65
CLIP1P30622 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CLIP1P30622 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CLIP1P30622 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC31.62■■■□□ 2.65
CLIP1P30622 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CLIP1P30622 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
CLIP1P30622 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC31.62■■■□□ 2.65
CLIP1P30622 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC31.62■■■□□ 2.65
CLIP1P30622 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC31.62■■■□□ 2.65
CLIP1P30622 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CLIP1P30622 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC31.62■■■□□ 2.65
CLIP1P30622 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC31.62■■■□□ 2.65
CLIP1P30622 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CLIP1P30622 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC31.62■■■□□ 2.65
CLIP1P30622 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC31.62■■■□□ 2.65
CLIP1P30622 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CLIP1P30622 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC31.62■■■□□ 2.65
CLIP1P30622 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CLIP1P30622 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CLIP1P30622 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms