Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21■□□□□ 0.95
BDNFP23560 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21■□□□□ 0.95
BDNFP23560 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 AC092667.1-201ENST00000434301 2586 ntBASIC21■□□□□ 0.95
BDNFP23560 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 AL512408.1-201ENST00000569378 2000 ntBASIC21■□□□□ 0.95
BDNFP23560 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.99■□□□□ 0.95
BDNFP23560 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.99■□□□□ 0.95
BDNFP23560 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.99■□□□□ 0.95
BDNFP23560 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.99■□□□□ 0.95
BDNFP23560 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.99■□□□□ 0.95
BDNFP23560 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.99■□□□□ 0.95
BDNFP23560 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.99■□□□□ 0.95
BDNFP23560 Z99916.2-201ENST00000604037 246 ntBASIC20.99■□□□□ 0.95
BDNFP23560 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 NBPF21P-201ENST00000425093 1451 ntBASIC20.99■□□□□ 0.95
BDNFP23560 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.99■□□□□ 0.95
BDNFP23560 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BDNFP23560 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
BDNFP23560 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.98■□□□□ 0.95
BDNFP23560 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BDNFP23560 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.98■□□□□ 0.95
BDNFP23560 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.98■□□□□ 0.95
BDNFP23560 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.97■□□□□ 0.95
BDNFP23560 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
BDNFP23560 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.97■□□□□ 0.95
BDNFP23560 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.97■□□□□ 0.95
BDNFP23560 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
BDNFP23560 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
BDNFP23560 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
BDNFP23560 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.97■□□□□ 0.95
BDNFP23560 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BDNFP23560 BX119927.1-201ENST00000636596 1552 ntBASIC20.97■□□□□ 0.95
BDNFP23560 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.96■□□□□ 0.95
BDNFP23560 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.96■□□□□ 0.95
BDNFP23560 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
BDNFP23560 AL596275.1-201ENST00000423464 877 ntBASIC20.96■□□□□ 0.95
BDNFP23560 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
BDNFP23560 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
BDNFP23560 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.96■□□□□ 0.95
BDNFP23560 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.96■□□□□ 0.95
BDNFP23560 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.96■□□□□ 0.95
BDNFP23560 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.96■□□□□ 0.95
BDNFP23560 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.96■□□□□ 0.95
BDNFP23560 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.96■□□□□ 0.95
BDNFP23560 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BDNFP23560 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.95■□□□□ 0.94
BDNFP23560 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BDNFP23560 AL157384.1-201ENST00000445995 2473 ntBASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms