Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMS3P0CW19 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 AC087633.2-202ENST00000565166 1439 ntBASIC17.68■□□□□ 0.42
LIMS3P0CW19 SLC7A5P1-201ENST00000568957 537 ntBASIC17.68■□□□□ 0.42
LIMS3P0CW19 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.68■□□□□ 0.42
LIMS3P0CW19 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIMS3P0CW19 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
LIMS3P0CW19 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 AL138781.2-201ENST00000617896 1843 ntBASIC17.67■□□□□ 0.42
LIMS3P0CW19 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIMS3P0CW19 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMS3P0CW19 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMS3P0CW19 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMS3P0CW19 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LIMS3P0CW19 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMS3P0CW19 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMS3P0CW19 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.66■□□□□ 0.42
LIMS3P0CW19 PGM5P4-201ENST00000421970 445 ntBASIC17.66■□□□□ 0.42
LIMS3P0CW19 AC097381.1-201ENST00000429019 1296 ntBASIC17.66■□□□□ 0.42
LIMS3P0CW19 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.66■□□□□ 0.42
LIMS3P0CW19 CDV3P1-201ENST00000471403 739 ntBASIC17.66■□□□□ 0.42
LIMS3P0CW19 AC131212.1-201ENST00000613771 668 ntBASIC17.66■□□□□ 0.42
LIMS3P0CW19 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.66■□□□□ 0.42
LIMS3P0CW19 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIMS3P0CW19 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
LIMS3P0CW19 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIMS3P0CW19 AC019069.1-201ENST00000610008 1333 ntBASIC17.66■□□□□ 0.42
LIMS3P0CW19 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LIMS3P0CW19 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LIMS3P0CW19 AC008406.3-201ENST00000620001 1374 ntBASIC17.66■□□□□ 0.42
LIMS3P0CW19 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
LIMS3P0CW19 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMS3P0CW19 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIMS3P0CW19 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 AC027612.3-201ENST00000413684 1047 ntBASIC17.65■□□□□ 0.42
LIMS3P0CW19 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.65■□□□□ 0.42
LIMS3P0CW19 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.65■□□□□ 0.42
LIMS3P0CW19 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIMS3P0CW19 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.64■□□□□ 0.42
LIMS3P0CW19 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.64■□□□□ 0.42
LIMS3P0CW19 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
LIMS3P0CW19 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
LIMS3P0CW19 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.64■□□□□ 0.42
LIMS3P0CW19 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.64■□□□□ 0.41
LIMS3P0CW19 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIMS3P0CW19 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms