Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.48■□□□□ 0.71
HOXC4P09017 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.48■□□□□ 0.71
HOXC4P09017 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
HOXC4P09017 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 TSPY7P-201ENST00000431358 1114 ntBASIC19.47■□□□□ 0.71
HOXC4P09017 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC4P09017 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXC4P09017 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
HOXC4P09017 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
HOXC4P09017 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC4P09017 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC4P09017 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC4P09017 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC4P09017 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC4P09017 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC4P09017 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXC4P09017 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC4P09017 KRT18P16-201ENST00000510337 1294 ntBASIC19.46■□□□□ 0.71
HOXC4P09017 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC4P09017 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC4P09017 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXC4P09017 AP005212.1-201ENST00000581547 1997 ntBASIC19.46■□□□□ 0.71
HOXC4P09017 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC4P09017 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HOXC4P09017 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC4P09017 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC4P09017 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
HOXC4P09017 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXC4P09017 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC4P09017 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HOXC4P09017 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HOXC4P09017 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HOXC4P09017 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.45■□□□□ 0.7
HOXC4P09017 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC4P09017 KSR1P1-201ENST00000446298 240 ntBASIC19.45■□□□□ 0.7
HOXC4P09017 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXC4P09017 AP002982.1-201ENST00000492365 877 ntBASIC19.45■□□□□ 0.7
HOXC4P09017 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC4P09017 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.45■□□□□ 0.7
HOXC4P09017 CD177P1-201ENST00000606252 935 ntBASIC19.45■□□□□ 0.7
HOXC4P09017 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HOXC4P09017 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HOXC4P09017 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HOXC4P09017 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HOXC4P09017 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC4P09017 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXC4P09017 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC4P09017 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC4P09017 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC4P09017 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC4P09017 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HOXC4P09017 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
HOXC4P09017 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC4P09017 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC4P09017 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXC4P09017 NIFKP9-201ENST00000419265 221 ntBASIC19.44■□□□□ 0.7
HOXC4P09017 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC4P09017 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC4P09017 C1QL1P1-201ENST00000568105 661 ntBASIC19.44■□□□□ 0.7
HOXC4P09017 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXC4P09017 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC4P09017 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
HOXC4P09017 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HOXC4P09017 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXC4P09017 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXC4P09017 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXC4P09017 GABARAPL3-202ENST00000624044 1851 ntBASIC19.43■□□□□ 0.7
HOXC4P09017 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
HOXC4P09017 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC4P09017 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HOXC4P09017 AL162377.1-201ENST00000618844 1793 ntBASIC19.43■□□□□ 0.7
HOXC4P09017 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HOXC4P09017 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC4P09017 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HOXC4P09017 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC4P09017 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC4P09017 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC4P09017 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXC4P09017 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC4P09017 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXC4P09017 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
HOXC4P09017 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms