Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.67■□□□□ 0.26
ABCA1O95477 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ABCA1O95477 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.67■□□□□ 0.26
ABCA1O95477 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.67■□□□□ 0.26
ABCA1O95477 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.67■□□□□ 0.26
ABCA1O95477 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ABCA1O95477 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA1O95477 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA1O95477 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA1O95477 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA1O95477 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
ABCA1O95477 AL121829.2-201ENST00000620908 328 ntBASIC16.66■□□□□ 0.26
ABCA1O95477 AC079598.2-202ENST00000546624 1451 ntBASIC16.66■□□□□ 0.26
ABCA1O95477 KRT18P22-201ENST00000402024 1347 ntBASIC16.66■□□□□ 0.26
ABCA1O95477 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA1O95477 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA1O95477 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ABCA1O95477 AL390719.1-204ENST00000412397 1219 ntBASIC16.66■□□□□ 0.26
ABCA1O95477 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.66■□□□□ 0.26
ABCA1O95477 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
ABCA1O95477 C2orf69P3-201ENST00000565542 1120 ntBASIC16.66■□□□□ 0.26
ABCA1O95477 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.66■□□□□ 0.26
ABCA1O95477 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
ABCA1O95477 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
ABCA1O95477 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.65■□□□□ 0.26
ABCA1O95477 FAM197Y1-201ENST00000421178 764 ntBASIC16.65■□□□□ 0.26
ABCA1O95477 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.65■□□□□ 0.26
ABCA1O95477 FEM1AP4-201ENST00000443167 1987 ntBASIC16.65■□□□□ 0.26
ABCA1O95477 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
ABCA1O95477 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.65■□□□□ 0.26
ABCA1O95477 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 HTR7P1-201ENST00000538670 1336 ntBASIC16.65■□□□□ 0.26
ABCA1O95477 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ABCA1O95477 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ABCA1O95477 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.65■□□□□ 0.26
ABCA1O95477 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.65■□□□□ 0.26
ABCA1O95477 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.65■□□□□ 0.26
ABCA1O95477 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.65■□□□□ 0.26
ABCA1O95477 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.65■□□□□ 0.26
ABCA1O95477 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
ABCA1O95477 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.26
ABCA1O95477 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA1O95477 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC16.64■□□□□ 0.25
ABCA1O95477 MMP23A-201ENST00000234610 1017 ntBASIC16.64■□□□□ 0.25
ABCA1O95477 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.64■□□□□ 0.25
ABCA1O95477 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.64■□□□□ 0.25
ABCA1O95477 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
ABCA1O95477 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.64■□□□□ 0.25
ABCA1O95477 AL157384.1-201ENST00000445995 2473 ntBASIC16.64■□□□□ 0.25
ABCA1O95477 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA1O95477 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA1O95477 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA1O95477 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA1O95477 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ABCA1O95477 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ABCA1O95477 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.63■□□□□ 0.25
ABCA1O95477 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.63■□□□□ 0.25
ABCA1O95477 RBM17P1-201ENST00000453646 1190 ntBASIC16.63■□□□□ 0.25
ABCA1O95477 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.63■□□□□ 0.25
ABCA1O95477 AL024507.2-201ENST00000606070 2574 ntBASIC16.63■□□□□ 0.25
ABCA1O95477 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
ABCA1O95477 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
ABCA1O95477 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.63■□□□□ 0.25
ABCA1O95477 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.63■□□□□ 0.25
ABCA1O95477 AC116562.2-201ENST00000507042 360 ntBASIC16.63■□□□□ 0.25
ABCA1O95477 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 AL590326.2-201ENST00000625139 305 ntBASIC16.63■□□□□ 0.25
ABCA1O95477 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.63■□□□□ 0.25
ABCA1O95477 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ABCA1O95477 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA1O95477 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
ABCA1O95477 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.62■□□□□ 0.25
ABCA1O95477 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA1O95477 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.62■□□□□ 0.25
ABCA1O95477 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA1O95477 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA1O95477 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ABCA1O95477 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA1O95477 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA1O95477 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ABCA1O95477 AC073508.3-201ENST00000619697 1419 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms