Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RAPGEF3O95398 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RAPGEF3O95398 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
RAPGEF3O95398 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
RAPGEF3O95398 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC30.07■■■□□ 2.4
RAPGEF3O95398 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 AC096733.2-201ENST00000609937 1394 ntBASIC30.06■■■□□ 2.4
RAPGEF3O95398 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
RAPGEF3O95398 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
RAPGEF3O95398 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RAPGEF3O95398 SLC25A1P2-201ENST00000430693 912 ntBASIC30.06■■■□□ 2.4
RAPGEF3O95398 HOMER2P1-201ENST00000455653 964 ntBASIC30.06■■■□□ 2.4
RAPGEF3O95398 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC30.06■■■□□ 2.4
RAPGEF3O95398 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC30.06■■■□□ 2.4
RAPGEF3O95398 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC30.06■■■□□ 2.4
RAPGEF3O95398 AC011298.2-201ENST00000617989 482 ntBASIC30.06■■■□□ 2.4
RAPGEF3O95398 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC30.06■■■□□ 2.4
RAPGEF3O95398 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC30.06■■■□□ 2.4
RAPGEF3O95398 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
RAPGEF3O95398 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RAPGEF3O95398 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 TSPY21P-201ENST00000433481 731 ntBASIC30.05■■■□□ 2.4
RAPGEF3O95398 TSPY23P-201ENST00000440136 739 ntBASIC30.05■■■□□ 2.4
RAPGEF3O95398 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RAPGEF3O95398 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RAPGEF3O95398 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
RAPGEF3O95398 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC30.05■■■□□ 2.4
RAPGEF3O95398 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RAPGEF3O95398 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RAPGEF3O95398 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
RAPGEF3O95398 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC30.04■■■□□ 2.4
RAPGEF3O95398 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC30.04■■■□□ 2.4
RAPGEF3O95398 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC30.04■■■□□ 2.4
RAPGEF3O95398 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC30.04■■■□□ 2.4
RAPGEF3O95398 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RAPGEF3O95398 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
RAPGEF3O95398 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RAPGEF3O95398 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
RAPGEF3O95398 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
RAPGEF3O95398 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RAPGEF3O95398 KRT8P20-201ENST00000423953 1409 ntBASIC30.03■■■□□ 2.4
RAPGEF3O95398 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC30.03■■■□□ 2.4
RAPGEF3O95398 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RAPGEF3O95398 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RAPGEF3O95398 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC30.02■■■□□ 2.4
RAPGEF3O95398 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
RAPGEF3O95398 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC30.02■■■□□ 2.4
RAPGEF3O95398 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC30.02■■■□□ 2.4
RAPGEF3O95398 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC30.02■■■□□ 2.4
RAPGEF3O95398 AL023803.3-201ENST00000615559 522 ntBASIC30.02■■■□□ 2.4
RAPGEF3O95398 AL023973.1-201ENST00000624619 620 ntBASIC30.02■■■□□ 2.4
RAPGEF3O95398 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RAPGEF3O95398 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
RAPGEF3O95398 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.4
RAPGEF3O95398 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
RAPGEF3O95398 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC30.01■■■□□ 2.4
RAPGEF3O95398 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 DYM-203ENST00000442713 2147 ntTSL 2 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 PRSS44-201ENST00000515154 1146 ntBASIC30.01■■■□□ 2.39
RAPGEF3O95398 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC30.01■■■□□ 2.39
RAPGEF3O95398 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC30.01■■■□□ 2.39
RAPGEF3O95398 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
RAPGEF3O95398 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
RAPGEF3O95398 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC30■■■□□ 2.39
RAPGEF3O95398 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms