Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC027124.1-201ENST00000440852 466 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 SLAMF6P1-201ENST00000451067 602 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 RPL23AP8-201ENST00000479812 475 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 RN7SL849P-201ENST00000485236 295 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC122714.1-201ENST00000502510 459 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC096754.1-201ENST00000508904 818 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 COL6A4P2-205ENST00000509855 506 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC026458.1-201ENST00000564330 438 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 Z99289.1-201ENST00000585373 807 ntTSL 3 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 SIGLEC31P-201ENST00000594237 551 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC004943.1-203ENST00000624370 1074 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC008626.2-201ENST00000624425 248 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC005355.2-201ENST00000625064 484 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 CASC19-232ENST00000641480 1244 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AL596275.2-203ENST00000641951 371 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC126474.2-201ENST00000623268 1750 ntBASIC7.1□□□□□ -1.27
DKK3Q9UBP4 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
DKK3Q9UBP4 AC137056.2-201ENST00000624055 1958 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC090220.1-201ENST00000593078 1699 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 CDY7P-201ENST00000429883 1604 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AP000568.1-201ENST00000282964 442 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 NRIR-201ENST00000366140 799 ntTSL 3 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 MIR99A-201ENST00000384906 81 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 SUMO2P13-201ENST00000403109 272 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AL359715.1-201ENST00000404330 555 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 SETP22-201ENST00000412243 957 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC009518.3-201ENST00000438972 253 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 VN1R96P-201ENST00000446052 858 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 OR51P1P-201ENST00000447547 942 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC022730.1-201ENST00000473114 568 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 RN7SL649P-201ENST00000496974 275 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 CARSP2-201ENST00000520688 277 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC023310.2-201ENST00000553844 547 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AC140479.4-205ENST00000636339 820 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 TMEM14EP-202ENST00000639378 1296 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 OR2A3P-202ENST00000641249 1776 ntBASIC7.09□□□□□ -1.27
DKK3Q9UBP4 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC7.09□□□□□ -1.27
DKK3Q9UBP4 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC7.09□□□□□ -1.28
DKK3Q9UBP4 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
DKK3Q9UBP4 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC7.09□□□□□ -1.28
DKK3Q9UBP4 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC7.09□□□□□ -1.28
DKK3Q9UBP4 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms