Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 HPSE2-204ENST00000404542 3681 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 TMEM45A-201ENST00000323523 1567 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 PIWIL3-204ENST00000533313 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 PDIK1L-201ENST00000374269 2566 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 LIPF-202ENST00000355843 1357 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 METTL21EP-201ENST00000298105 713 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RNA5SP79-201ENST00000365193 109 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 SNORD65C-201ENST00000390962 71 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL049545.1-201ENST00000401856 572 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 VDAC1P8-201ENST00000406025 853 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC021876.1-201ENST00000425959 359 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RPS6P15-201ENST00000431996 751 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC084290.1-201ENST00000434995 374 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 LINC00460-201ENST00000435024 631 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 CR391992.1-201ENST00000438601 394 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL353093.1-201ENST00000441292 436 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL157414.2-201ENST00000442780 377 ntTSL 3 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL589880.1-201ENST00000448271 287 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 GCNT1P5-201ENST00000449274 682 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL929410.2-201ENST00000451170 189 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC234782.3-201ENST00000461229 433 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RPS18P13-201ENST00000461260 454 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RN7SL19P-201ENST00000462522 306 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RPL34P22-201ENST00000468193 318 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 C1orf112-208ENST00000496973 782 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC117383.2-201ENST00000514722 322 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RNU6-1004P-201ENST00000516584 111 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 OR5AK3P-201ENST00000527486 1297 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 HIGD1AP9-201ENST00000550710 279 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL512430.4-201ENST00000603085 613 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC005303.1-201ENST00000607906 740 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC010975.3-201ENST00000618727 978 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 KRTAP4-1-202ENST00000620667 737 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC005609.2-201ENST00000623320 592 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 DLST-216ENST00000626051 252 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 CLEC19A-205ENST00000636231 561 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC005841.2-201ENST00000637658 1167 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC119674.1-209ENST00000642031 997 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 PIWIL2-205ENST00000611073 2864 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 CCL28-201ENST00000361115 3126 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 HDAC1P1-201ENST00000455482 1445 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 AC104964.2-201ENST00000562242 4641 ntBASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC8.53□□□□□ -1.04
TRAIPQ9BWF2 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
TRAIPQ9BWF2 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC8.52□□□□□ -1.04
TRAIPQ9BWF2 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
TRAIPQ9BWF2 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 CDYLP1-201ENST00000419017 1458 ntBASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 OR7E11P-202ENST00000642027 1491 ntBASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 DCAF5-208ENST00000556847 2791 ntTSL 5 BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 PPHLN1-202ENST00000317560 1359 ntTSL 2 BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 AC093909.4-201ENST00000514297 1991 ntTSL 5 BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 RGS7-202ENST00000366563 2206 ntTSL 5 BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 ALOX5AP-201ENST00000380490 904 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 KRTAP3-3-201ENST00000391586 704 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 SULT1C4-202ENST00000409309 1045 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 RNU4-22P-201ENST00000411058 166 ntBASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 VTA1P1-201ENST00000414044 866 ntBASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 AC023141.1-201ENST00000419418 379 ntBASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 AC093107.1-201ENST00000422772 609 ntBASIC8.52□□□□□ -1.05
TRAIPQ9BWF2 RPSAP32-201ENST00000432681 526 ntBASIC8.52□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms