Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC013244.3-201ENST00000605614 388 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 AL008582.1-201ENST00000609612 442 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 AC107905.1-201ENST00000616204 426 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 SNORA11.6-201ENST00000619030 128 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 AC008626.2-201ENST00000624425 248 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC7.22□□□□□ -1.25
USP39Q53GS9 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC7.22□□□□□ -1.25
USP39Q53GS9 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC7.22□□□□□ -1.25
USP39Q53GS9 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
USP39Q53GS9 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 AL359396.1-201ENST00000623151 2376 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.25
USP39Q53GS9 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
USP39Q53GS9 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
USP39Q53GS9 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC7.21□□□□□ -1.25
USP39Q53GS9 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC7.21□□□□□ -1.25
USP39Q53GS9 AL021877.2-201ENST00000624442 10684 ntBASIC7.21□□□□□ -1.25
USP39Q53GS9 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
USP39Q53GS9 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
USP39Q53GS9 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 PRKAA1-201ENST00000296800 1134 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 TAAR2-202ENST00000367931 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC245036.1-201ENST00000391727 309 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 CASKP1-201ENST00000412870 582 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 RPLP1P10-201ENST00000413972 339 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 SSR1P2-201ENST00000415208 787 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 BMP6P1-201ENST00000431230 679 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AL031681.1-201ENST00000443304 400 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 IGKV1OR2-2-201ENST00000451163 355 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 GAPDHP53-201ENST00000458397 924 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 AL139824.2-201ENST00000458731 1095 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 RN7SL393P-201ENST00000463588 296 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 PFN2-213ENST00000494827 793 ntTSL 4 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC7.21□□□□□ -1.26
USP39Q53GS9 OR51A1P-201ENST00000511110 946 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC022826.1-201ENST00000519383 805 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC7.21□□□□□ -1.26
USP39Q53GS9 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC026458.1-201ENST00000564330 438 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 AC007614.3-201ENST00000564875 654 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 RN7SL178P-201ENST00000582930 304 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 OR1AB1P-201ENST00000585564 761 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC068802.1-201ENST00000603420 732 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC098590.2-201ENST00000614787 281 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC016957.2-201ENST00000616998 848 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 MIR6849-201ENST00000618543 69 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
USP39Q53GS9 AL109659.3-201ENST00000624985 950 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 AL034408.1-201ENST00000637712 664 ntBASIC7.21□□□□□ -1.26
USP39Q53GS9 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
USP39Q53GS9 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.21□□□□□ -1.26
USP39Q53GS9 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC7.2□□□□□ -1.26
USP39Q53GS9 EEF1A1P20-201ENST00000514852 1386 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 AC006116.1-201ENST00000587908 2171 ntBASIC7.2□□□□□ -1.26
USP39Q53GS9 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 PAH-201ENST00000307000 2466 ntTSL 5 BASIC7.2□□□□□ -1.26
USP39Q53GS9 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
USP39Q53GS9 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC7.2□□□□□ -1.26
USP39Q53GS9 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms