Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NXPE2P1-201ENST00000543705 726 ntBASIC6.38□□□□□ -1.39
SOX3P41225 PPIAP6-201ENST00000557078 499 ntBASIC6.38□□□□□ -1.39
SOX3P41225 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.38□□□□□ -1.39
SOX3P41225 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC6.38□□□□□ -1.39
SOX3P41225 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SOX3P41225 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 U91328.4-201ENST00000608919 517 ntBASIC6.38□□□□□ -1.39
SOX3P41225 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 RNGTT-203ENST00000538899 1374 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 CRYZ-201ENST00000340866 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 AC105114.1-201ENST00000624795 1862 ntBASIC6.38□□□□□ -1.39
SOX3P41225 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SOX3P41225 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.38□□□□□ -1.39
SOX3P41225 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.38□□□□□ -1.39
SOX3P41225 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.38□□□□□ -1.39
SOX3P41225 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.38□□□□□ -1.39
SOX3P41225 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SOX3P41225 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.37□□□□□ -1.39
SOX3P41225 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.37□□□□□ -1.39
SOX3P41225 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 DDX43P1-201ENST00000510713 1763 ntBASIC6.37□□□□□ -1.39
SOX3P41225 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 AC095038.1-201ENST00000429248 1591 ntBASIC6.37□□□□□ -1.39
SOX3P41225 OGFOD1P1-201ENST00000447552 1592 ntBASIC6.37□□□□□ -1.39
SOX3P41225 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
SOX3P41225 RNA5SP512-201ENST00000364550 120 ntBASIC6.37□□□□□ -1.39
SOX3P41225 RN7SKP189-201ENST00000365042 330 ntBASIC6.37□□□□□ -1.39
SOX3P41225 RNA5SP152-201ENST00000365184 110 ntBASIC6.37□□□□□ -1.39
SOX3P41225 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC6.37□□□□□ -1.39
SOX3P41225 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
SOX3P41225 AL079341.1-201ENST00000404701 1207 ntBASIC6.37□□□□□ -1.39
SOX3P41225 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 HMGN1P32-201ENST00000441744 256 ntBASIC6.37□□□□□ -1.39
SOX3P41225 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.37□□□□□ -1.39
SOX3P41225 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 AC063955.1-201ENST00000462872 685 ntBASIC6.37□□□□□ -1.39
SOX3P41225 RN7SL390P-201ENST00000470634 284 ntBASIC6.37□□□□□ -1.39
SOX3P41225 UOX-201ENST00000471089 899 ntBASIC6.37□□□□□ -1.39
SOX3P41225 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC6.37□□□□□ -1.39
SOX3P41225 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 IGKV2D-38-201ENST00000518423 240 ntBASIC6.37□□□□□ -1.39
SOX3P41225 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC6.37□□□□□ -1.39
SOX3P41225 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.37□□□□□ -1.39
SOX3P41225 ACER3-213ENST00000533873 929 ntTSL 2 BASIC6.37□□□□□ -1.39
SOX3P41225 FXNP1-201ENST00000555153 337 ntBASIC6.37□□□□□ -1.39
SOX3P41225 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC6.37□□□□□ -1.39
SOX3P41225 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 AC073862.4-201ENST00000622982 854 ntBASIC6.37□□□□□ -1.39
SOX3P41225 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 AC099654.15-201ENST00000639802 509 ntBASIC6.37□□□□□ -1.39
SOX3P41225 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.37□□□□□ -1.39
SOX3P41225 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 AC023632.6-201ENST00000624338 2177 ntBASIC6.37□□□□□ -1.39
SOX3P41225 DLEU2L-201ENST00000371086 3555 ntBASIC6.37□□□□□ -1.39
SOX3P41225 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.37□□□□□ -1.39
SOX3P41225 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SOX3P41225 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.37□□□□□ -1.39
SOX3P41225 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SOX3P41225 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
SOX3P41225 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
SOX3P41225 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
SOX3P41225 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
SOX3P41225 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.36□□□□□ -1.39
SOX3P41225 OLMALINC-203ENST00000641087 3779 ntBASIC6.36□□□□□ -1.39
SOX3P41225 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms