Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 BUB3P1-201ENST00000458451 999 ntBASIC7.79□□□□□ -1.16
MSX1P28360 KLF3P2-201ENST00000465138 268 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RPL22-207ENST00000484532 449 ntTSL 2 BASIC7.79□□□□□ -1.16
MSX1P28360 RNU6-314P-201ENST00000516574 104 ntBASIC7.79□□□□□ -1.16
MSX1P28360 FAXDC2-206ENST00000518651 536 ntTSL 4 BASIC7.79□□□□□ -1.16
MSX1P28360 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 AC008619.1-201ENST00000524312 567 ntTSL 4 BASIC7.79□□□□□ -1.16
MSX1P28360 CENPUP1-201ENST00000526649 1202 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AC087379.2-201ENST00000532242 471 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 ST3GAL3-237ENST00000533933 834 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 TMEM269-202ENST00000536543 983 ntAPPRIS P2 TSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 PRR13-206ENST00000549135 755 ntAPPRIS ALT2 TSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 HIF1A-AS2-201ENST00000554254 533 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 LINC02295-201ENST00000557072 374 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 LINC02330-201ENST00000557784 555 ntTSL 4 BASIC7.79□□□□□ -1.16
MSX1P28360 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC7.79□□□□□ -1.16
MSX1P28360 AC099508.2-201ENST00000563098 510 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 CFAP52-208ENST00000576499 711 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 AC125421.2-202ENST00000580776 477 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 ZNF559-ZNF177-205ENST00000602856 419 ntTSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 IGKV3OR2-5-201ENST00000605851 281 ntBASIC7.79□□□□□ -1.16
MSX1P28360 MIR6751-201ENST00000610479 63 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AL731556.2-201ENST00000615610 770 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AC027139.2-201ENST00000615639 448 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AL357080.1-201ENST00000617394 239 ntBASIC7.79□□□□□ -1.16
MSX1P28360 CR381653.2-201ENST00000624041 768 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AC025048.6-202ENST00000627667 438 ntBASIC7.79□□□□□ -1.16
MSX1P28360 ZNF410-225ENST00000639051 936 ntTSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 SAMMSON-214ENST00000641395 1264 ntBASIC7.79□□□□□ -1.16
MSX1P28360 CSF3R-203ENST00000373103 3454 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 SERPINB2-201ENST00000299502 1913 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC7.79□□□□□ -1.16
MSX1P28360 MAPK10-301ENST00000641313 2482 ntBASIC7.79□□□□□ -1.16
MSX1P28360 GTF2IP12-202ENST00000634317 5052 ntTSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 LINC00837-201ENST00000443246 3991 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 HKR1-202ENST00000392153 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 TRAF6P1-201ENST00000429404 1558 ntBASIC7.79□□□□□ -1.16
MSX1P28360 C2orf91-201ENST00000378711 3721 ntAPPRIS P2 TSL 2 BASIC7.79□□□□□ -1.16
MSX1P28360 ENOX2-207ENST00000610637 2422 ntTSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 OR9I1-202ENST00000641439 3184 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
MSX1P28360 AL035555.1-201ENST00000404462 1790 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AC000367.1-201ENST00000452711 1766 ntBASIC7.79□□□□□ -1.16
MSX1P28360 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 FAXDC2-201ENST00000326080 3251 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 HBP1-208ENST00000468410 2704 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
MSX1P28360 MITF-202ENST00000314589 1993 ntTSL 2 BASIC7.79□□□□□ -1.16
MSX1P28360 AC009053.1-202ENST00000563377 2051 ntBASIC7.79□□□□□ -1.16
MSX1P28360 SNCA-201ENST00000336904 3041 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 PREPL-204ENST00000409272 3030 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 RPL4P3-201ENST00000428881 1311 ntBASIC7.78□□□□□ -1.16
MSX1P28360 CAP2-203ENST00000465994 1404 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 SRPK2-214ENST00000489828 2560 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 ADAM2-205ENST00000521880 2125 ntAPPRIS ALT2 TSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 NOLC1-202ENST00000405356 3967 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 SMIM12-204ENST00000446026 2817 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 SUGT1P3-201ENST00000304932 1051 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 SPINK6-201ENST00000325630 686 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 SUGT1P2-201ENST00000379452 992 ntBASIC7.78□□□□□ -1.16
MSX1P28360 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 DSCR4-202ENST00000398948 777 ntAPPRIS ALT2 TSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 CNN2P7-201ENST00000400583 932 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AL356057.2-201ENST00000403318 432 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AL034372.1-201ENST00000407586 754 ntBASIC7.78□□□□□ -1.16
MSX1P28360 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 RNU2-65P-201ENST00000410162 185 ntBASIC7.78□□□□□ -1.16
MSX1P28360 HMGN1P34-201ENST00000413023 290 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AC009237.5-201ENST00000414271 501 ntBASIC7.78□□□□□ -1.16
MSX1P28360 OFD1P18Y-201ENST00000420889 959 ntBASIC7.78□□□□□ -1.16
MSX1P28360 TMEM211-202ENST00000423535 695 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
MSX1P28360 OR8F1P-201ENST00000425243 930 ntBASIC7.78□□□□□ -1.16
MSX1P28360 ETF1P3-201ENST00000430422 1160 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 AC112492.2-201ENST00000432774 1030 ntBASIC7.78□□□□□ -1.16
MSX1P28360 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 RPL15P1-201ENST00000439981 600 ntBASIC7.78□□□□□ -1.16
MSX1P28360 HIPK1-AS1-203ENST00000441071 571 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 AL035417.1-201ENST00000442754 214 ntBASIC7.78□□□□□ -1.16
MSX1P28360 BX005266.3-201ENST00000443013 1075 ntBASIC7.78□□□□□ -1.16
MSX1P28360 CHRM3-AS1-201ENST00000444721 486 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC7.78□□□□□ -1.16
MSX1P28360 OR2AI1P-201ENST00000448534 932 ntBASIC7.78□□□□□ -1.16
MSX1P28360 LINC01937-201ENST00000448543 553 ntTSL 4 BASIC7.78□□□□□ -1.16
MSX1P28360 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 EZR-AS1-201ENST00000451712 217 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 SCDP1-201ENST00000455244 1081 ntBASIC7.78□□□□□ -1.16
MSX1P28360 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 OR9A3P-202ENST00000485185 878 ntBASIC7.78□□□□□ -1.16
MSX1P28360 MTCYBP17-201ENST00000503579 789 ntBASIC7.78□□□□□ -1.16
MSX1P28360 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC7.78□□□□□ -1.16
MSX1P28360 AC010307.4-202ENST00000507403 389 ntTSL 3 BASIC7.78□□□□□ -1.16
MSX1P28360 AC024589.1-201ENST00000512207 263 ntBASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms