Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PPIAP23-201ENST00000420099 497 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 SLAMF6P1-201ENST00000451067 602 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 BZW1P1-201ENST00000454901 1240 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 EIF3LP2-201ENST00000457262 807 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 CBX5P1-201ENST00000468470 561 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 RPL21P42-201ENST00000488408 464 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 RN7SL143P-201ENST00000496780 297 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 RPS20-202ENST00000518875 671 ntTSL 2 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 AP000662.1-201ENST00000530952 487 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HLA-DMBP28068 NQO1-205ENST00000561500 891 ntTSL 3 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC126323.4-201ENST00000566935 234 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 RN7SL131P-201ENST00000579043 256 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 AL035410.2-201ENST00000604963 864 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AL683813.2-201ENST00000605245 502 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AL121782.1-201ENST00000611242 413 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 PTCHD3P1-201ENST00000612350 537 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 PCA3_2.1-201ENST00000612507 409 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 Six3os1_1.1-201ENST00000620900 87 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AC117503.3-201ENST00000623811 601 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 AP003108.4-201ENST00000623917 878 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HLA-DMBP28068 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HLA-DMBP28068 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HLA-DMBP28068 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HLA-DMBP28068 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HLA-DMBP28068 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 OLMALINC-203ENST00000641087 3779 ntBASIC5.18□□□□□ -1.58
HLA-DMBP28068 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.18□□□□□ -1.58
HLA-DMBP28068 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HLA-DMBP28068 RACGAP1P-201ENST00000550663 1879 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 BRD7P1-201ENST00000557705 1915 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 CCAT2-201ENST00000630920 1752 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AL161901.1-201ENST00000624954 3425 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 RPL24P4-201ENST00000326586 421 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 RNA5SP512-201ENST00000364550 120 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ZNF37CP-201ENST00000406795 241 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 MICG-208ENST00000416822 132 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 EIF4A1P5-201ENST00000428062 1095 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AL451063.1-201ENST00000450164 1133 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 GAPDHP53-201ENST00000458397 924 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 MTCO1P55-201ENST00000489829 745 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC093325.1-201ENST00000508378 326 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC007106.1-201ENST00000509666 600 ntTSL 4 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 CFI-204ENST00000510800 667 ntTSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC100854.1-201ENST00000520351 341 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AP001803.1-201ENST00000525668 147 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AP001646.2-201ENST00000528645 1156 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 OR5M6P-201ENST00000530227 937 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 EEF1A1P17-201ENST00000547505 1275 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC092375.1-201ENST00000550410 637 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC233699.1-201ENST00000569955 1168 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC122710.3-201ENST00000606566 541 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC087894.3-201ENST00000623682 349 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 JAKMIP2-AS1-202ENST00000627433 831 ntTSL 3 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms