Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AL049840.6-201ENST00000604583 345 ntBASIC8.41□□□□□ -1.06
LIG1P18858 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC8.41□□□□□ -1.06
LIG1P18858 SNORA43.5-201ENST00000631270 138 ntBASIC8.41□□□□□ -1.06
LIG1P18858 CCNT1-206ENST00000640148 596 ntTSL 5 BASIC8.41□□□□□ -1.06
LIG1P18858 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC8.41□□□□□ -1.06
LIG1P18858 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 AL589993.1-201ENST00000407450 2524 ntBASIC8.41□□□□□ -1.06
LIG1P18858 AC006116.1-201ENST00000587908 2171 ntBASIC8.41□□□□□ -1.06
LIG1P18858 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC8.4□□□□□ -1.06
LIG1P18858 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC8.4□□□□□ -1.06
LIG1P18858 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 AL590065.1-201ENST00000603371 4774 ntBASIC8.4□□□□□ -1.06
LIG1P18858 SSX6-201ENST00000376932 562 ntBASIC8.4□□□□□ -1.06
LIG1P18858 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 OR7E91P-201ENST00000400027 866 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AL356057.1-202ENST00000402263 756 ntBASIC8.4□□□□□ -1.06
LIG1P18858 CNPY1-202ENST00000406197 560 ntTSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 NFU1P1-201ENST00000413128 774 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC008753.1-201ENST00000423096 284 ntBASIC8.4□□□□□ -1.06
LIG1P18858 UBE2V1P1-201ENST00000430836 445 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AL035246.1-201ENST00000433554 1255 ntBASIC8.4□□□□□ -1.06
LIG1P18858 SUMO2P8-201ENST00000434672 286 ntBASIC8.4□□□□□ -1.06
LIG1P18858 MRPS33P4-201ENST00000434892 317 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 RPSAP49-201ENST00000445182 886 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AL161646.1-201ENST00000447860 1013 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC8.4□□□□□ -1.06
LIG1P18858 RNU6-964P-201ENST00000516524 69 ntBASIC8.4□□□□□ -1.06
LIG1P18858 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 ST13P6-201ENST00000522430 1102 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC8.4□□□□□ -1.06
LIG1P18858 PSMC1P8-201ENST00000536820 1296 ntBASIC8.4□□□□□ -1.06
LIG1P18858 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 BMS1P15-201ENST00000554269 1141 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 AC093524.1-201ENST00000564266 1094 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC133569.1-201ENST00000564327 373 ntBASIC8.4□□□□□ -1.06
LIG1P18858 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 AC105275.2-201ENST00000567907 711 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC023824.3-201ENST00000569003 562 ntBASIC8.4□□□□□ -1.06
LIG1P18858 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 AC006120.1-201ENST00000579375 546 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AP001094.1-201ENST00000579805 193 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC009955.2-201ENST00000597288 542 ntBASIC8.4□□□□□ -1.06
LIG1P18858 INTS6-AS1-218ENST00000598905 906 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
LIG1P18858 ANKRD20A19P-203ENST00000602724 295 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC137695.2-201ENST00000603123 754 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AC007262.1-201ENST00000604099 321 ntBASIC8.4□□□□□ -1.06
LIG1P18858 AL450270.1-201ENST00000606160 391 ntBASIC8.4□□□□□ -1.06
LIG1P18858 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC8.4□□□□□ -1.06
LIG1P18858 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC8.4□□□□□ -1.06
LIG1P18858 AC004801.6-201ENST00000616571 978 ntBASIC8.4□□□□□ -1.06
LIG1P18858 LGI1-209ENST00000627699 664 ntTSL 3 BASIC8.4□□□□□ -1.06
LIG1P18858 OR10G8-202ENST00000641224 1033 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
LIG1P18858 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
LIG1P18858 AP000766.1-201ENST00000561746 4140 ntBASIC8.4□□□□□ -1.07
LIG1P18858 ENO1P4-201ENST00000416471 1785 ntBASIC8.4□□□□□ -1.07
LIG1P18858 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC8.4□□□□□ -1.07
LIG1P18858 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
LIG1P18858 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
LIG1P18858 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
LIG1P18858 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC8.39□□□□□ -1.07
LIG1P18858 OFD1P10Y-201ENST00000434110 1433 ntBASIC8.39□□□□□ -1.07
LIG1P18858 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC8.39□□□□□ -1.07
LIG1P18858 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
LIG1P18858 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC8.39□□□□□ -1.07
LIG1P18858 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC8.39□□□□□ -1.07
LIG1P18858 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC8.39□□□□□ -1.07
LIG1P18858 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC8.39□□□□□ -1.07
LIG1P18858 AL078621.1-201ENST00000272567 768 ntBASIC8.39□□□□□ -1.07
LIG1P18858 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
LIG1P18858 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms