Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC011611.6-201ENST00000547483 255 ntBASIC6.74□□□□□ -1.33
VMP1Q96GC9 AC126177.6-201ENST00000550420 1009 ntBASIC6.74□□□□□ -1.33
VMP1Q96GC9 OR4N3P-201ENST00000559395 818 ntBASIC6.74□□□□□ -1.33
VMP1Q96GC9 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 NDUFA3P4-201ENST00000560814 250 ntBASIC6.74□□□□□ -1.33
VMP1Q96GC9 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 THSD4-AS1-204ENST00000566268 468 ntTSL 4 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 AC024085.1-201ENST00000604299 432 ntBASIC6.74□□□□□ -1.33
VMP1Q96GC9 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 AC135068.4-201ENST00000622949 925 ntBASIC6.74□□□□□ -1.33
VMP1Q96GC9 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 CASC19-232ENST00000641480 1244 ntBASIC6.74□□□□□ -1.33
VMP1Q96GC9 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VMP1Q96GC9 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
VMP1Q96GC9 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AL513548.1-201ENST00000562904 1724 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 PROS2P-201ENST00000474651 1951 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 IARS-205ENST00000443024 4341 ntTSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 FAUP2-201ENST00000394301 401 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 C21orf140-201ENST00000410005 756 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 EAF2-202ENST00000451944 960 ntTSL 2 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 RPS4XP19-201ENST00000460237 736 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC026336.1-201ENST00000466577 351 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 TUBBP11-201ENST00000472255 252 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 RN7SL776P-201ENST00000493390 268 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 FTH1P8-201ENST00000498161 514 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 PFN2-217ENST00000498307 556 ntTSL 4 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 HNRNPA1P71-201ENST00000559135 950 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC234775.3-201ENST00000564612 656 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 RN7SL667P-201ENST00000582817 298 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC068802.1-201ENST00000603420 732 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 AL683813.2-201ENST00000605245 502 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 AL161931.1-201ENST00000612768 246 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 RFC1-217ENST00000639695 867 ntTSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AL596275.2-203ENST00000641951 371 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 OR7E161P-202ENST00000641994 1033 ntBASIC6.73□□□□□ -1.33
VMP1Q96GC9 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.73□□□□□ -1.33
VMP1Q96GC9 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VMP1Q96GC9 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.72□□□□□ -1.33
VMP1Q96GC9 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
VMP1Q96GC9 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
VMP1Q96GC9 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
VMP1Q96GC9 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC6.72□□□□□ -1.33
VMP1Q96GC9 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
VMP1Q96GC9 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.72□□□□□ -1.33
VMP1Q96GC9 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC6.72□□□□□ -1.33
VMP1Q96GC9 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
VMP1Q96GC9 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
VMP1Q96GC9 RNA5SP514-201ENST00000363717 111 ntBASIC6.72□□□□□ -1.33
VMP1Q96GC9 NUDT5-202ENST00000378937 919 ntTSL 3 BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms