Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 RPL5P5-201ENST00000392009 893 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AF228730.1-201ENST00000397972 663 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 RN7SKP205-201ENST00000410999 307 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 RPL5P34-201ENST00000426545 891 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 AC002069.1-201ENST00000429649 1159 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 KRTAP3-4P-201ENST00000430780 280 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 AL590762.3-201ENST00000436372 640 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 RPL5P9-201ENST00000448118 886 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AC236972.4-201ENST00000458091 963 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 AC040975.1-201ENST00000472104 316 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 RPS3AP15-201ENST00000483874 781 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 RPL5P33-201ENST00000487833 905 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AC105233.1-201ENST00000498840 781 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC7.23□□□□□ -1.25
USP39Q53GS9 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 IGHVIII-26-1-201ENST00000520387 250 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 VBP1-203ENST00000535916 944 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AC013283.1-201ENST00000557282 492 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 AC093283.1-201ENST00000565306 1075 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 EEF1B2P1-201ENST00000567221 672 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC7.23□□□□□ -1.25
USP39Q53GS9 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 MIR4428-201ENST00000584884 73 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 KATNBL1P1-201ENST00000605192 748 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AC068620.4-201ENST00000636730 1182 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 CAP1P2-201ENST00000417455 1409 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 UGT2B25P-201ENST00000511504 1586 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 TMEM75-201ENST00000624314 2165 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 ARHGAP42P4-201ENST00000549782 2934 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AL355578.1-201ENST00000607405 1328 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC7.22□□□□□ -1.25
USP39Q53GS9 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
USP39Q53GS9 SP110-203ENST00000358662 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC090643.1-201ENST00000623600 3100 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC7.22□□□□□ -1.25
USP39Q53GS9 MTCO1P4-201ENST00000520516 1409 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 SNORD94-201ENST00000386037 137 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 MTND4P13-201ENST00000402078 1023 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 SNORA11.3-201ENST00000408471 128 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 RN7SKP85-201ENST00000411349 318 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC006509.1-201ENST00000420788 634 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 AC002127.1-201ENST00000421305 225 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 RPL17P35-201ENST00000432217 549 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 Z80107.1-201ENST00000436830 412 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC7.22□□□□□ -1.25
USP39Q53GS9 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC234771.3-201ENST00000454984 622 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 RN7SL492P-201ENST00000460700 295 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC7.22□□□□□ -1.25
USP39Q53GS9 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC114324.2-202ENST00000503812 134 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 NREP-217ENST00000509025 987 ntTSL 3 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC7.22□□□□□ -1.25
USP39Q53GS9 LINC02270-202ENST00000515691 541 ntTSL 3 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC138517.1-201ENST00000515724 568 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 NREP-223ENST00000515855 801 ntTSL 4 BASIC7.22□□□□□ -1.25
USP39Q53GS9 RN7SKP233-201ENST00000517005 110 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC7.22□□□□□ -1.25
USP39Q53GS9 AP003102.1-201ENST00000525638 661 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC7.22□□□□□ -1.25
USP39Q53GS9 OR5M6P-201ENST00000530227 937 ntBASIC7.22□□□□□ -1.25
USP39Q53GS9 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms