Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 TRAV8-3-201ENST00000390435 341 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
LIG1P18858 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 AL024507.1-201ENST00000412741 274 ntBASIC8.42□□□□□ -1.06
LIG1P18858 EIF4A1P13-201ENST00000415667 230 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC109638.1-201ENST00000417406 326 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 EEF1A1P34-201ENST00000419888 1267 ntBASIC8.42□□□□□ -1.06
LIG1P18858 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 MTCO1P51-201ENST00000427672 1060 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC8.42□□□□□ -1.06
LIG1P18858 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC8.42□□□□□ -1.06
LIG1P18858 AC092162.2-203ENST00000430460 579 ntTSL 4 BASIC8.42□□□□□ -1.06
LIG1P18858 OR5G3-201ENST00000435756 929 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
LIG1P18858 SNX18P9-201ENST00000440580 835 ntBASIC8.42□□□□□ -1.06
LIG1P18858 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC8.42□□□□□ -1.06
LIG1P18858 RPL6P24-201ENST00000445338 864 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC005515.1-201ENST00000456368 289 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 MTCYBP14-201ENST00000457471 715 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC117395.2-201ENST00000463122 1128 ntBASIC8.42□□□□□ -1.06
LIG1P18858 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 RN7SL58P-201ENST00000473445 294 ntBASIC8.42□□□□□ -1.06
LIG1P18858 RN7SL647P-201ENST00000485429 300 ntBASIC8.42□□□□□ -1.06
LIG1P18858 C1orf112-208ENST00000496973 782 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC8.42□□□□□ -1.06
LIG1P18858 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC8.42□□□□□ -1.06
LIG1P18858 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC8.42□□□□□ -1.06
LIG1P18858 AC145350.1-201ENST00000567426 208 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC8.42□□□□□ -1.06
LIG1P18858 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC8.42□□□□□ -1.06
LIG1P18858 AC015726.1-201ENST00000602353 681 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC087752.4-201ENST00000605911 462 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC080013.3-201ENST00000606839 578 ntBASIC8.42□□□□□ -1.06
LIG1P18858 SNORA35B-201ENST00000607417 129 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC245008.1-201ENST00000608123 476 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC018690.1-201ENST00000608144 626 ntBASIC8.42□□□□□ -1.06
LIG1P18858 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC8.42□□□□□ -1.06
LIG1P18858 AC092140.2-201ENST00000618027 521 ntBASIC8.42□□□□□ -1.06
LIG1P18858 AC026367.3-201ENST00000619032 590 ntBASIC8.42□□□□□ -1.06
LIG1P18858 RN7SL680P-201ENST00000620379 299 ntBASIC8.42□□□□□ -1.06
LIG1P18858 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
LIG1P18858 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
LIG1P18858 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
LIG1P18858 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 AC092821.2-201ENST00000545710 2042 ntBASIC8.41□□□□□ -1.06
LIG1P18858 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 AL049634.1-201ENST00000453770 1720 ntBASIC8.41□□□□□ -1.06
LIG1P18858 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 INSL5-201ENST00000304526 715 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 NOX4-203ENST00000375979 816 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC8.41□□□□□ -1.06
LIG1P18858 SLC25A24P1-202ENST00000434803 1220 ntBASIC8.41□□□□□ -1.06
LIG1P18858 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 AC114755.4-201ENST00000439114 443 ntBASIC8.41□□□□□ -1.06
LIG1P18858 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC8.41□□□□□ -1.06
LIG1P18858 HIST1H2APS6-201ENST00000448609 364 ntBASIC8.41□□□□□ -1.06
LIG1P18858 MORF4L1P4-201ENST00000450245 976 ntBASIC8.41□□□□□ -1.06
LIG1P18858 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC8.41□□□□□ -1.06
LIG1P18858 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC8.41□□□□□ -1.06
LIG1P18858 AC010468.3-201ENST00000508225 458 ntBASIC8.41□□□□□ -1.06
LIG1P18858 AC117383.2-201ENST00000514722 322 ntBASIC8.41□□□□□ -1.06
LIG1P18858 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC8.41□□□□□ -1.06
LIG1P18858 IGKV2-29-201ENST00000521304 372 ntBASIC8.41□□□□□ -1.06
LIG1P18858 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC8.41□□□□□ -1.06
LIG1P18858 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC8.41□□□□□ -1.06
LIG1P18858 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
LIG1P18858 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC8.41□□□□□ -1.06
LIG1P18858 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC8.41□□□□□ -1.06
LIG1P18858 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC8.41□□□□□ -1.06
LIG1P18858 FCF1-203ENST00000553615 954 ntTSL 3 BASIC8.41□□□□□ -1.06
LIG1P18858 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC8.41□□□□□ -1.06
LIG1P18858 AC106730.2-201ENST00000566641 540 ntBASIC8.41□□□□□ -1.06
LIG1P18858 CBLN2-203ENST00000581073 537 ntTSL 4 BASIC8.41□□□□□ -1.06
LIG1P18858 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC8.41□□□□□ -1.06
LIG1P18858 AC007136.1-201ENST00000589141 199 ntBASIC8.41□□□□□ -1.06
LIG1P18858 AC245036.5-201ENST00000596330 847 ntBASIC8.41□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms