Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 AC092718.2-202ENST00000566390 556 ntTSL 4 BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 AC011921.2-201ENST00000589465 152 ntBASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 AL078623.1-201ENST00000602702 907 ntBASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 AC097641.3-201ENST00000613523 464 ntBASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 AC004943.1-203ENST00000624370 1074 ntBASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC6.98□□□□□ -1.29
HDDC3Q8N4P3 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AL121949.2-201ENST00000403446 1548 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 RNU1-65P-201ENST00000363919 148 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 SNORA64.3-201ENST00000365647 134 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 SNORA70G-201ENST00000383923 142 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC092642.1-201ENST00000392417 425 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 FTH1P10-202ENST00000430907 550 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC007383.1-201ENST00000445875 636 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 RN7SL379P-201ENST00000479912 293 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 PFN1P8-201ENST00000497012 543 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC093878.1-201ENST00000515630 432 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 Vault.2-201ENST00000516519 98 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 PTTG3P-201ENST00000521862 606 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC125612.1-201ENST00000547580 377 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 MT1CP-201ENST00000567054 174 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 BX323046.1-201ENST00000610145 535 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AL121583.1-201ENST00000612444 682 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 SLC9A9-201ENST00000316549 3627 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 DLEU2L-201ENST00000371086 3555 ntBASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
HDDC3Q8N4P3 AC129502.1-201ENST00000623261 1654 ntBASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 DAZ3-201ENST00000315357 3277 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 DAZ2-201ENST00000382294 3277 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 DAZ4-204ENST00000415508 3277 ntTSL 5 BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 AC092701.1-201ENST00000623627 1551 ntBASIC6.96□□□□□ -1.29
HDDC3Q8N4P3 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 RNA5SP232-201ENST00000364144 119 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms