Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 UGT2B27P-201ENST00000505092 1620 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.23□□□□□ -1.57
HLA-DMBP28068 NEK2P4-201ENST00000425793 1329 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HLA-DMBP28068 AL512310.3-201ENST00000547023 1335 ntBASIC5.23□□□□□ -1.57
HLA-DMBP28068 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AP002833.3-201ENST00000625075 2265 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC008957.3-201ENST00000624112 2242 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 NUDT5-202ENST00000378937 919 ntTSL 3 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 MIR152-201ENST00000385212 87 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 FAUP2-201ENST00000394301 401 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 RNA5SP177-201ENST00000410122 107 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 MEAF6P1-201ENST00000416092 327 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AL359633.1-201ENST00000421403 310 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 OR52S1P-201ENST00000427016 937 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 RPS7P4-201ENST00000444127 582 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 RN7SL456P-201ENST00000469290 295 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC091982.1-202ENST00000473923 343 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 RPL7AP30-201ENST00000482859 796 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AF305872.1-201ENST00000485217 471 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 LECT2-203ENST00000512872 762 ntTSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AP003084.1-201ENST00000524828 742 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 NDUFA3P2-201ENST00000531434 232 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC079866.1-201ENST00000534985 1220 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC023161.1-201ENST00000549532 420 ntTSL 3 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AL591767.3-201ENST00000554632 525 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC026951.2-201ENST00000613847 241 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 TEX41-279ENST00000629149 609 ntTSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC010168.2-201ENST00000562691 5428 ntBASIC5.22□□□□□ -1.57
HLA-DMBP28068 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HLA-DMBP28068 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC5.22□□□□□ -1.57
HLA-DMBP28068 AC129502.1-201ENST00000623261 1654 ntBASIC5.21□□□□□ -1.57
HLA-DMBP28068 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC5.21□□□□□ -1.57
HLA-DMBP28068 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HLA-DMBP28068 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HLA-DMBP28068 OR5AU1-201ENST00000304418 1199 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 RNA5SP429-201ENST00000363688 109 ntBASIC5.21□□□□□ -1.58
HLA-DMBP28068 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HLA-DMBP28068 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 SNORA11D-201ENST00000408548 128 ntBASIC5.21□□□□□ -1.58
HLA-DMBP28068 SNORA11E-201ENST00000408778 128 ntBASIC5.21□□□□□ -1.58
HLA-DMBP28068 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 MTND4LP17-201ENST00000414607 293 ntBASIC5.21□□□□□ -1.58
HLA-DMBP28068 CHCHD3P1-201ENST00000425516 676 ntBASIC5.21□□□□□ -1.58
HLA-DMBP28068 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 AC009362.1-201ENST00000427253 406 ntBASIC5.21□□□□□ -1.58
HLA-DMBP28068 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC5.21□□□□□ -1.58
HLA-DMBP28068 RPL14P5-201ENST00000436474 730 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms