Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 RNU6-1017P-201ENST00000363613 106 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AC006511.2-201ENST00000388966 660 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 RPL10P10-201ENST00000403509 664 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 RN7SKP232-201ENST00000410170 290 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 RN7SKP85-201ENST00000411349 318 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 OR6R1P-201ENST00000431838 940 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AC105052.2-201ENST00000434317 794 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AL354983.1-201ENST00000434580 906 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 LINC01732-201ENST00000435023 542 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC009237.4-201ENST00000441078 238 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 TXNP2-201ENST00000443918 295 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC8.47□□□□□ -1.05
HMGB1P09429 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC107015.1-201ENST00000466902 747 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 RN7SL145P-201ENST00000469955 296 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 STRADBP1-201ENST00000478954 1281 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 CHCHD2P7-201ENST00000508008 452 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC104997.1-201ENST00000519761 717 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 OR7E154P-201ENST00000525174 932 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 AL117192.1-204ENST00000553485 449 ntTSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC067805.1-201ENST00000559344 470 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC021506.1-201ENST00000581971 597 ntTSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC005726.4-201ENST00000582858 458 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 MIR4470-201ENST00000583453 72 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 STARD6-204ENST00000584040 660 ntTSL 3 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC006116.6-201ENST00000593258 1103 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 HMGB1P51-201ENST00000605166 638 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AC004839.1-201ENST00000610269 501 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 IFNA5-201ENST00000610521 987 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
HMGB1P09429 AC068234.2-201ENST00000619646 522 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AL132796.3-201ENST00000624703 900 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 HBG1-202ENST00000632727 369 ntTSL 3 BASIC8.47□□□□□ -1.05
HMGB1P09429 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
HMGB1P09429 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 AC138915.4-201ENST00000565549 4147 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 AL390726.6-202ENST00000635962 1365 ntTSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.05
HMGB1P09429 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC8.46□□□□□ -1.05
HMGB1P09429 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC8.46□□□□□ -1.05
HMGB1P09429 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC8.46□□□□□ -1.05
HMGB1P09429 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC8.46□□□□□ -1.05
HMGB1P09429 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC8.46□□□□□ -1.05
HMGB1P09429 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.05
HMGB1P09429 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC8.46□□□□□ -1.05
HMGB1P09429 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
HMGB1P09429 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC8.46□□□□□ -1.05
HMGB1P09429 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC8.46□□□□□ -1.05
HMGB1P09429 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC8.46□□□□□ -1.06
HMGB1P09429 RN7SKP62-201ENST00000384539 329 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 MIR199B-201ENST00000384849 110 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 TRBV28-201ENST00000390400 364 ntAPPRIS P1 BASIC8.46□□□□□ -1.06
HMGB1P09429 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 FTH1P26-201ENST00000406512 701 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 GRIK1-AS1-202ENST00000412579 818 ntTSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 MTCYBP7-201ENST00000419540 1134 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 YY1P1-201ENST00000427625 668 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC8.46□□□□□ -1.06
HMGB1P09429 AL161626.1-201ENST00000441480 490 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC8.46□□□□□ -1.06
HMGB1P09429 FAM177B-204ENST00000445590 1096 ntAPPRIS P1 TSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC8.46□□□□□ -1.06
HMGB1P09429 CCRL1P1-201ENST00000449542 1053 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 RN7SL392P-201ENST00000473024 299 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 AC079944.1-201ENST00000485426 495 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 RPS10P20-201ENST00000494130 463 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC8.46□□□□□ -1.06
HMGB1P09429 AC027315.1-201ENST00000511592 469 ntTSL 3 BASIC8.46□□□□□ -1.06
HMGB1P09429 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC8.46□□□□□ -1.06
HMGB1P09429 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC8.46□□□□□ -1.06
HMGB1P09429 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC8.46□□□□□ -1.06
HMGB1P09429 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC8.46□□□□□ -1.06
HMGB1P09429 AC233290.1-201ENST00000553021 1186 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 RN7SL366P-201ENST00000577957 292 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 AC090774.2-201ENST00000584708 322 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 LSM1P2-201ENST00000604911 322 ntBASIC8.46□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms