Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 MIR6721-201ENST00000617181 87 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 DNAJA1P6-201ENST00000437347 354 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RN7SL55P-201ENST00000464534 297 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RPS3AP49-201ENST00000472161 790 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC008967.1-201ENST00000504843 163 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC012368.3-201ENST00000604190 219 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL512624.1-201ENST00000613638 469 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RAD54L2-201ENST00000409535 9776 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 MKI67P1-201ENST00000604297 1460 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 CU633906.2-205ENST00000624847 1468 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 NNT-AS1-204ENST00000513560 4769 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 LRRC37A15P-201ENST00000514785 1355 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 E2F6P3-201ENST00000441743 743 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 OR2AF1P-201ENST00000454899 889 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 LNX1-AS2-202ENST00000509974 628 ntTSL 2 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 GNG2-203ENST00000553432 577 ntTSL 4 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 UNC5C-201ENST00000453304 9875 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC009948.5-201ENST00000624360 4406 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 LARP1P1-201ENST00000407692 292 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC022080.2-201ENST00000452932 533 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RN7SL160P-201ENST00000468558 284 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 RN7SL518P-201ENST00000491887 280 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 CCDC60-204ENST00000539847 581 ntAPPRIS ALT2 TSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC097381.3-201ENST00000608962 462 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC061999.1-201ENST00000624454 177 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AL132796.3-201ENST00000624703 900 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC111152.1-202ENST00000635848 339 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC2.11□□□□□ -2.07
SYNE1Q8NF91 AC011447.6-201ENST00000623510 2598 ntBASIC2.11□□□□□ -2.07
SYNE1Q8NF91 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC102941.1-201ENST00000567616 1537 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 RPA3-204ENST00000406109 434 ntTSL 3 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 ATP5A1P8-201ENST00000423669 1291 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AL354893.1-201ENST00000433735 348 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 PNKDP1-201ENST00000435914 430 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC146944.3-201ENST00000509969 371 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 SNORA81.2-201ENST00000516868 170 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 OR5M6P-201ENST00000530227 937 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC084851.2-201ENST00000530377 364 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC005519.1-201ENST00000554490 601 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC020978.7-201ENST00000575953 1187 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC018992.1-201ENST00000523778 2149 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 RACGAP1P-201ENST00000550663 1879 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 RN7SKP174-201ENST00000363803 330 ntBASIC2.1□□□□□ -2.07
SYNE1Q8NF91 TINAG-203ENST00000370869 782 ntTSL 3 BASIC2.1□□□□□ -2.07
SYNE1Q8NF91 SNORA70G-201ENST00000383923 142 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms