Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC139493.1-201ENST00000604368 397 ntBASIC6.14□□□□□ -1.43
H3F3AP84243 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC6.14□□□□□ -1.43
H3F3AP84243 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.14□□□□□ -1.43
H3F3AP84243 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC6.14□□□□□ -1.43
H3F3AP84243 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.14□□□□□ -1.43
H3F3AP84243 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC6.14□□□□□ -1.43
H3F3AP84243 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
H3F3AP84243 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
H3F3AP84243 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC6.14□□□□□ -1.43
H3F3AP84243 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
H3F3AP84243 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
H3F3AP84243 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
H3F3AP84243 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
H3F3AP84243 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.14□□□□□ -1.43
H3F3AP84243 AC020658.2-201ENST00000559030 4020 ntBASIC6.14□□□□□ -1.43
H3F3AP84243 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
H3F3AP84243 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
H3F3AP84243 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
H3F3AP84243 AC126474.2-201ENST00000623268 1750 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 MAPK10-365ENST00000641902 3825 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 AC079949.2-201ENST00000617117 2933 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 AC007993.1-201ENST00000621298 2430 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 MIR640-201ENST00000385086 96 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 LDHAP5-201ENST00000394996 622 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 RPLP1P10-201ENST00000413972 339 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC6.13□□□□□ -1.43
H3F3AP84243 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC6.13□□□□□ -1.43
H3F3AP84243 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 MEF2AP1-201ENST00000454867 863 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.13□□□□□ -1.43
H3F3AP84243 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 LDHC-204ENST00000536880 957 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC6.13□□□□□ -1.43
H3F3AP84243 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 AC100832.2-201ENST00000582080 776 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 AC091768.1-201ENST00000609258 930 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 AC131009.3-201ENST00000621809 287 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 AC073857.1-201ENST00000625082 1054 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC6.13□□□□□ -1.43
H3F3AP84243 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC6.13□□□□□ -1.43
H3F3AP84243 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
H3F3AP84243 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 CREM-216ENST00000429130 1476 ntTSL 5 BASIC6.13□□□□□ -1.43
H3F3AP84243 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 ASNSP6-201ENST00000592770 1618 ntBASIC6.13□□□□□ -1.43
H3F3AP84243 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.13□□□□□ -1.43
H3F3AP84243 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
H3F3AP84243 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.12□□□□□ -1.43
H3F3AP84243 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 RNA5SP429-201ENST00000363688 109 ntBASIC6.12□□□□□ -1.43
H3F3AP84243 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 DLEU2L-201ENST00000371086 3555 ntBASIC6.12□□□□□ -1.43
H3F3AP84243 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
H3F3AP84243 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms